DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and CG5003

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_651593.1 Gene:CG5003 / 43344 FlyBaseID:FBgn0039554 Length:713 Species:Drosophila melanogaster


Alignment Length:434 Identity:91/434 - (20%)
Similarity:150/434 - (34%) Gaps:108/434 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 LPAVSINPKIMESSSDSCSLSSSTTPDVGLADQQRNMAGSAQDQSEDQSQTFLGATELDDELIKQ 242
            |.||.:.|.:.:       :.:...|::....:::....|...::|.....|.      |||   
  Fly    28 LAAVPVQPVLPQ-------IPTEEEPEIKQRKREKEHKESLDRETECNLMDFC------DEL--- 76

  Fly   243 LPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKINLFDFQRDIEGP----VIENISQR 303
                 |..:|.|||..|:.........:..|.||...:..|:|.:      ||    ::|.|..|
  Fly    77 -----LFEIFQYLDTSSILAVMHCSPRFENLLLDHRFYHHIDLSN------GPLPMGILEEILGR 130

  Fly   304 CRGFLKSLSLRGCQS----VGD--QSVRTLANHCHNIEHLDLSDCKKIT-DISTQSISRYCSKLT 361
            ......::.:.|..|    .|:  |..:||::....:..|.:.:.:.:: |.....|:.:.:.|.
  Fly   131 ATEKTHTIKICGPPSSQHVAGEFRQFTQTLSSVFPRVVQLKVLELEGVSLDFEYIHITEFPATLR 195

  Fly   362 AINLHSCS---NITDNSLKY-----LSDGCPNLMEINV---SWCHLISENGVEALARGCVKLRKF 415
            .:.|..||   ..|..|:.|     |.|    |.::::   ||.......|:..|.    .||:.
  Fly   196 RLKLKDCSVRVGDTPKSIFYSIELHLLD----LEDLSIEDNSWFEPYYIMGLSKLP----SLRRL 252

  Fly   416 SSKGCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAANCHKLQKLCVSKCADLTDLTL 480
            |.|||:        .|.|:.|...:......:.:....:||...|...||  |.|...:|.:| |
  Fly   253 SLKGCQ--------ALCKFVPYGSMAARFGFQKLESLDLRQTPINNSDLQ--CFSAIENLKEL-L 306

  Fly   481 LSLSQHNHLLNTLEVSGCR-NFTDIGFQALGRNCKYLERMDLEECSQITDLTLAHLATGCPSLEK 544
            |...|..|....:...... |.||                  |..|...| :|..|:...||..:
  Fly   307 LESPQILHSKQAVAKKNTNGNATD------------------EAASPQPD-SLKVLSDDEPSTSR 352

  Fly   545 LTLSHCELITDDGIRHLTTGSCAAEILSVLELDNCPLITDRTLE 588
            ..:.|..             :|..    ...||||   :||..|
  Fly   353 AAMEHLR-------------ACKV----AFNLDNC---SDRKEE 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 12/43 (28%)
leucine-rich repeat 280..307 CDD:275381 7/30 (23%)
AMN1 <308..453 CDD:187754 32/162 (20%)
leucine-rich repeat 308..327 CDD:275381 4/24 (17%)
leucine-rich repeat 334..359 CDD:275381 3/25 (12%)
leucine-rich repeat 360..385 CDD:275381 9/32 (28%)
leucine-rich repeat 386..411 CDD:275381 5/27 (19%)
AMN1 <409..586 CDD:187754 39/177 (22%)
leucine-rich repeat 412..437 CDD:275381 8/24 (33%)
leucine-rich repeat 438..463 CDD:275381 3/24 (13%)
leucine-rich repeat 464..515 CDD:275381 13/51 (25%)
leucine-rich repeat 516..541 CDD:275381 5/24 (21%)
leucine-rich repeat 542..561 CDD:275381 1/18 (6%)
leucine-rich repeat 571..595 CDD:275381 7/18 (39%)
leucine-rich repeat 596..621 CDD:275381
CG5003NP_651593.1 F-box 69..111 CDD:425796 13/55 (24%)
leucine-rich repeat 610..635 CDD:275381
Blue background indicates that the domain is not in the aligned region.

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