DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9003 and Ppa

DIOPT Version :9

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001261138.1 Gene:Ppa / 37602 FlyBaseID:FBgn0020257 Length:562 Species:Drosophila melanogaster


Alignment Length:653 Identity:143/653 - (21%)
Similarity:268/653 - (41%) Gaps:169/653 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GTGSSSSNNGGGSSSNSGGAGGSIELLCPPSGS-------SSISGSASFSSNSGASGSSSQTHST 77
            |:||:.:...||::....||||:      ||.:       :.:.|    .:.:||    :.||..
  Fly    27 GSGSNGAATSGGAAIGGAGAGGA------PSWAMDELYQQTELPG----LTRTGA----TTTHHH 77

  Fly    78 AVSSATDRSNNNGNNHN-----PSLQLNGNGGSNTRQHSSGSNSRQHSSSSSNSNSSNISPPPSS 137
            .:.......::...:|.     |:|.|                  ||:::::.:         ::
  Fly    78 LLRFTPYALHHRPPHHQLQTLPPALYL------------------QHAAAAAAA---------AA 115

  Fly   138 SSSSRSNNNNNNHSSNIISGFCSTIWRSATFGSATPVINPLPAVSINPKIMESSSDSCSLSSSTT 202
            ::::.:.:::::|                         :.||....:|:             |..
  Fly   116 AAAAHAQHHHHHH-------------------------HHLPHRPASPE-------------SPP 142

  Fly   203 PDVGLADQQRNMAGSAQDQSEDQSQTFLGATELDDELIKQLPKEVLLRVFSYLDVVSLCRCAQVC 267
            |                               ::...|..|..|:|.::|.:|.|..|.|.||||
  Fly   143 P-------------------------------VEGTHISNLFPELLEQIFEHLPVRDLGRAAQVC 176

  Fly   268 KYWNVLALDGSSWQKI-----------NLFD--FQRDIEGPVIENISQRCRGF------LKSLSL 313
            ..|...|...|.|:.:           :||:  .:|.|:...|.::.:..:..      |.||:|
  Fly   177 TAWRDAAYAKSVWKGVEAKLHLKRSSPSLFNCLVKRGIKKVQILSLRRSLKDLVLGVPALTSLNL 241

  Fly   314 RGCQSVGDQSV-RTLANHCHNIEHLDLSDCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLK 377
            .||.:|.|.:: ...:....|::.||||.||:|||.|...|:::...|..:.|..|.|||:..|.
  Fly   242 SGCFNVADMNLGHAFSVDLPNLKTLDLSLCKQITDTSLGRIAQHLRNLETLELGGCCNITNTGLL 306

  Fly   378 YLSDGCPNLMEINVSWCHLISENGVEAL-------ARGCVKLRKFSSKGCKQINDNAIMCLAKYC 435
            .::.|...|..:|:..|..||:.|:..|       |.|.::|.....:.|::::|.|:..:|:..
  Fly   307 LIAWGLKKLKHLNLRSCWHISDQGIGHLAGFSRETAEGNLQLEYLGLQDCQRLSDEALGHIAQGL 371

  Fly   436 PDLMVLNLHSCETITDSSIRQLAANCHKLQKLCVSKCADLTDLTLLSLSQHNHLLNTLEVSGCRN 500
            ..|..:||..|.::|||.::.| |...||::|.:..|.:::|:.:..|::....:|:|:||.|..
  Fly   372 TSLKSINLSFCVSVTDSGLKHL-ARMPKLEQLNLRSCDNISDIGMAYLTEGGSGINSLDVSFCDK 435

  Fly   501 FTDIGFQALGRNCKYLERMDLEECSQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHLTTGS 565
            .:|.....:.:....|..:.|.:| ||||..:..:|.....||.|.:..|..|||.|::.|    
  Fly   436 ISDQALTHIAQGLYRLRSLSLNQC-QITDHGMLKIAKALHELENLNIGQCSRITDKGLQTL---- 495

  Fly   566 CAAEI--LSVLELDNCPLITDRTLEHLVSCHNLQRIEL----------FDCQ-LITRTAIRKLKN 617
             |.::  |..::|..|..::.:.::.::....||::.|          .||. ...:.|.|...|
  Fly   496 -AEDLTNLKTIDLYGCTQLSSKGIDIIMKLPKLQKLNLGLWLVRXCVHHDCNACAAKEAARGSYN 559

  Fly   618 HLP 620
            ..|
  Fly   560 SQP 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box-like 240..285 CDD:289689 17/55 (31%)
leucine-rich repeat 280..307 CDD:275381 6/39 (15%)
AMN1 <308..453 CDD:187754 48/152 (32%)
leucine-rich repeat 308..327 CDD:275381 8/19 (42%)
leucine-rich repeat 334..359 CDD:275381 11/24 (46%)
leucine-rich repeat 360..385 CDD:275381 8/24 (33%)
leucine-rich repeat 386..411 CDD:275381 9/31 (29%)
AMN1 <409..586 CDD:187754 47/178 (26%)
leucine-rich repeat 412..437 CDD:275381 5/24 (21%)
leucine-rich repeat 438..463 CDD:275381 9/24 (38%)
leucine-rich repeat 464..515 CDD:275381 11/50 (22%)
leucine-rich repeat 516..541 CDD:275381 8/24 (33%)
leucine-rich repeat 542..561 CDD:275381 8/18 (44%)
leucine-rich repeat 571..595 CDD:275381 3/23 (13%)
leucine-rich repeat 596..621 CDD:275381 9/36 (25%)
PpaNP_001261138.1 F-box-like 149..190 CDD:289689 16/40 (40%)
AMN1 <226..>334 CDD:187754 34/107 (32%)
leucine-rich repeat 236..256 CDD:275381 8/19 (42%)
leucine-rich repeat 263..288 CDD:275381 11/24 (46%)
leucine-rich repeat 289..314 CDD:275381 8/24 (33%)
leucine-rich repeat 315..347 CDD:275381 9/31 (29%)
AMN1 347..524 CDD:187754 47/183 (26%)
leucine-rich repeat 348..373 CDD:275381 5/24 (21%)
leucine-rich repeat 374..398 CDD:275381 9/24 (38%)
leucine-rich repeat 399..424 CDD:275381 5/24 (21%)
leucine-rich repeat 425..450 CDD:275381 6/24 (25%)
leucine-rich repeat 451..475 CDD:275381 8/24 (33%)
leucine-rich repeat 476..501 CDD:275381 10/29 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457933
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I1756
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46756
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.890

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