DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and Fbxl6

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001005563.1 Gene:Fbxl6 / 362941 RGDID:1359687 Length:535 Species:Rattus norvegicus


Alignment Length:444 Identity:99/444 - (22%)
Similarity:166/444 - (37%) Gaps:113/444 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 LDDELIKQLPKEVLLRVFSYL-----DVVSLCRCAQVCKYWNVLALDGSSWQKINLFDFQRDIEG 294
            ||.....::|.|||:.:|..|     .:..|.|.|:||::|:......|.|..:.|        .
  Rat    99 LDSGWGDRIPLEVLVHIFGLLVAAHGPMPFLGRAARVCRHWHEATSHPSLWHTVTL--------S 155

  Fly   295 PVIENISQRCRGFLKSLSLRGCQSVGDQSVRT-----LANHCHNIEHLDLSDCKKITDISTQSIS 354
            |.:  :.:..:|.||          |::.:..     :.|....::.|.|...|.......:.:|
  Rat   156 PAL--VGRAAKGNLK----------GEKKLLACLEWLIPNRFSQLQRLTLIHWKSQVHSVLELVS 208

  Fly   355 RYCSKLTAINLHSCSNITDNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGCVKLRK----F 415
            ::|.:||.:.|..|..:|..:|..|:..|..|..:::....:.|...|..|.....::|:    :
  Rat   209 KFCPRLTFLKLSDCHGVTAETLVMLAKACCQLHSLDLHHSMVESTAVVSFLEEAGSRMRRLWLTY 273

  Fly   416 SSKGCKQINDNAIM--CLAKYCPDLMVLNLH---SC-ETITDSSIRQLAANCHKLQKLCV----- 469
            ||:      ..||:  .|...|..|.||.:.   || .|.....:..|...|.:||.|.:     
  Rat   274 SSQ------TTAILGALLGNCCSQLQVLEVSAGMSCNNTPLQLPVEALQRGCPQLQVLRLLNLIW 332

  Fly   470 --SKCA----------DLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGR--NCK-YLERM 519
              ..|.          .|.:|.|..             |.|   :.:..:.|||  :|. .|..:
  Rat   333 LPKPCGRGAPQGPGFPSLEELCLAG-------------STC---SFVSNEVLGRLLHCSPKLRLL 381

  Fly   520 DLEECSQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHLTTGSCAAEILSVLELDNCPLITD 584
            ||..|::||...|.||.  |..||:|.|         |:..::.|...|:       |..||:|.
  Rat   382 DLRGCARITPTGLCHLP--CQELEQLYL---------GLYGMSDGLALAK-------DGSPLLTQ 428

  Fly   585 RTLEHLVSCHNLQRIELFDCQLITRTAIRKLKNHLPNIKVHAYFAPGTPPAVTS 638
            :..      |.|:.:: |..|..:...:.:.      :.|.:....|.|||:.|
  Rat   429 KWY------HTLRELD-FSGQGFSEKDLEQA------LAVFSGTTEGLPPALCS 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 13/48 (27%)
leucine-rich repeat 280..307 CDD:275381 3/26 (12%)
AMN1 <308..453 CDD:187754 34/159 (21%)
leucine-rich repeat 308..327 CDD:275381 3/23 (13%)
leucine-rich repeat 334..359 CDD:275381 5/24 (21%)
leucine-rich repeat 360..385 CDD:275381 8/24 (33%)
leucine-rich repeat 386..411 CDD:275381 4/24 (17%)
AMN1 <409..586 CDD:187754 49/206 (24%)
leucine-rich repeat 412..437 CDD:275381 7/30 (23%)
leucine-rich repeat 438..463 CDD:275381 8/28 (29%)
leucine-rich repeat 464..515 CDD:275381 13/70 (19%)
leucine-rich repeat 516..541 CDD:275381 10/24 (42%)
leucine-rich repeat 542..561 CDD:275381 5/18 (28%)
leucine-rich repeat 571..595 CDD:275381 4/23 (17%)
leucine-rich repeat 596..621 CDD:275381 3/24 (13%)
Fbxl6NP_001005563.1 F-box_FBXL6 104..150 CDD:438891 13/45 (29%)
AMN1 171..390 CDD:187754 50/240 (21%)
leucine-rich repeat 188..213 CDD:275381 5/24 (21%)
leucine-rich repeat 214..239 CDD:275381 8/24 (33%)
leucine-rich repeat 240..291 CDD:275381 11/56 (20%)
leucine-rich repeat 292..321 CDD:275381 8/28 (29%)
leucine-rich repeat 322..349 CDD:275381 4/26 (15%)
AMN1 <349..500 CDD:187754 40/168 (24%)
leucine-rich repeat 350..377 CDD:275381 9/42 (21%)
leucine-rich repeat 378..401 CDD:275381 10/24 (42%)
leucine-rich repeat 434..466 CDD:275381 6/38 (16%)
leucine-rich repeat 467..491 CDD:275381 1/3 (33%)

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