DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and Amn1

DIOPT Version :9

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001008334.2 Gene:Amn1 / 302032 RGDID:1308119 Length:258 Species:Rattus norvegicus


Alignment Length:356 Identity:92/356 - (25%)
Similarity:142/356 - (39%) Gaps:113/356 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 RVFSYLDVVSLC-RCAQVCKYWNVLALDGSSWQKINLFDFQRDIEGPVIENISQRCRGFLKSLSL 313
            ||.|.|  :.|| ||.                 .||:..:..||: .:..||..|   .:|.:|:
  Rat     5 RVVSQL--LELCLRCL-----------------IINISRYISDIK-YLPPNIKDR---LIKIMSM 46

  Fly   314 RGCQSVGDQSVRTLANHCHNIEHLDLSDCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLKY 378
            ||  .:.|.::..:.:  ..::.|||..| .|:|::.|.:.: |.||.|:||.||....::    
  Rat    47 RG--RITDSNINEVLH--PEVQRLDLRSC-NISDVALQHLCK-CRKLKALNLKSCREHRNS---- 101

  Fly   379 LSDGCPNLMEINVSWCHLISENGVEALARGCVKLRKFSSKGCKQINDNAIMCLAKYCPDLMVLNL 443
                              |:..|::|:|..|..|.:.|.|||..:.|..::.||..|..|.:::|
  Rat   102 ------------------ITSEGIKAVASSCSDLHEISLKGCCSVTDEGVLALALNCQLLKIIDL 148

  Fly   444 HSCETITDSSIRQLAANCHKLQKLCVSKCADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQA 508
            ..|.:|||.|:..|..||..||      |.|               .:|.:||      |.|..|
  Rat   149 GGCLSITDESLHALGKNCPFLQ------CVD---------------FSTTQVS------DNGVVA 186

  Fly   509 L--GRNCKYLERMDLEECSQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHLTTGSCAAEIL 571
            |  |...|.||.:::..|..:||..:....|.||.:                       |     
  Rat   187 LVSGPCAKQLEEINMGYCINLTDKAVEAALTACPQI-----------------------C----- 223

  Fly   572 SVLELDNCPLITDRT---LEHLVSCHNLQRI 599
             :|....||||||.:   ||.|:....|:::
  Rat   224 -ILLFHGCPLITDHSREVLEQLIGSRKLKQV 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box-like 240..285 CDD:289689 9/35 (26%)
leucine-rich repeat 280..307 CDD:275381 7/26 (27%)
AMN1 <308..453 CDD:187754 40/144 (28%)
leucine-rich repeat 308..327 CDD:275381 5/18 (28%)
leucine-rich repeat 334..359 CDD:275381 8/24 (33%)
leucine-rich repeat 360..385 CDD:275381 6/24 (25%)
leucine-rich repeat 386..411 CDD:275381 5/24 (21%)
AMN1 <409..586 CDD:187754 49/178 (28%)
leucine-rich repeat 412..437 CDD:275381 9/24 (38%)
leucine-rich repeat 438..463 CDD:275381 10/24 (42%)
leucine-rich repeat 464..515 CDD:275381 12/52 (23%)
leucine-rich repeat 516..541 CDD:275381 7/24 (29%)
leucine-rich repeat 542..561 CDD:275381 0/18 (0%)
leucine-rich repeat 571..595 CDD:275381 10/26 (38%)
leucine-rich repeat 596..621 CDD:275381 1/4 (25%)
Amn1NP_001008334.2 leucine-rich repeat 10..35 CDD:275381 9/44 (20%)
leucine-rich repeat 36..58 CDD:275381 7/26 (27%)
AMN1 37..257 CDD:187754 78/304 (26%)
leucine-rich repeat 63..86 CDD:275381 8/24 (33%)
leucine-rich repeat 87..116 CDD:275381 11/50 (22%)
leucine-rich repeat 117..142 CDD:275381 9/24 (38%)
leucine-rich repeat 143..168 CDD:275381 10/24 (42%)
leucine-rich repeat 169..195 CDD:275381 12/52 (23%)
leucine-rich repeat 196..221 CDD:275381 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1046098at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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