DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and Skp2

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001099886.1 Gene:Skp2 / 294790 RGDID:1562456 Length:423 Species:Rattus norvegicus


Alignment Length:522 Identity:121/522 - (23%)
Similarity:211/522 - (40%) Gaps:141/522 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 NHSSNIISGFCSTIWRSATFGSATPVINPLPAVSINPKIMESSSDSCSLSSSTTPDVGLADQQRN 213
            :.|||:.:.| :..|.|:   ..:.:::.:...::..:.::|.:....|.|:      |...|..
  Rat    11 DQSSNVTTSF-TWGWDSS---KTSELLSGMGVSALEKEEVDSENIPHGLLSN------LGHPQSP 65

  Fly   214 MAGSAQDQSEDQSQTFLGATELDDELI-----KQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVL 273
            .....:.:..|:....:...:|:.|..     ..||.|:||.:||.|.:..|.|.:.|||.|..|
  Rat    66 PRKRLKSKGSDKDFVIIRRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLRVSGVCKRWYRL 130

  Fly   274 ALDGSSWQKINLF--DFQRDIEGPVIEN--ISQRC-RGFLKSLSLRGCQSVGD--QSVRTLANHC 331
            :||.|.||.::|.  :...|:...::..  ::.|| |.|::       |.:|:  .|.|      
  Rat   131 SLDESLWQSLDLAGKNLHPDVTVRLLSRGVVAFRCPRSFME-------QPLGESFSSFR------ 182

  Fly   332 HNIEHLDLSDCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLKYLSDGCPNLMEINVSWCH- 395
              ::|:|||                                 ||:            ||||..| 
  Rat   183 --VQHMDLS---------------------------------NSV------------INVSNLHG 200

  Fly   396 LISENGVEALARGCVKLRKFSSKGCKQINDNAIMCLAKYCPDLMVLNLHSCETITDSSIRQLAAN 460
            ::||         |.||:..|.:|. |::|..:..||:. .:|:.|||..|...::|::..|.::
  Rat   201 ILSE---------CSKLQNLSLEGL-QLSDPIVTTLAQN-ENLVRLNLCGCSGFSESAVATLLSS 254

  Fly   461 CHKLQKLCVSKCADLTDLTLLSLSQH-NHLLNTLEVSGCRNFTDIGFQALGRNCKYLERMDLEEC 524
            |.:|.:|.:|.|.|.|:..:.:...| ...|..|.:||.|              |.|::.||  |
  Rat   255 CSRLDELNLSWCFDFTEKHVQAAVAHLPDTLTQLNLSGYR--------------KNLQKTDL--C 303

  Fly   525 SQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHLTTGSCAAEI-----LSVLELDNCPLITD 584
            :         |...||:|.:|.||...::.:|         |..|.     |..|.|..|..|..
  Rat   304 T---------LIKRCPNLVRLDLSDSIMLKND---------CFPEFFQLNYLQHLSLSRCYDIIP 350

  Fly   585 RTLEHLVSCHNLQRIELFDCQLITRTAIRKLKNHLPNIKVH-AYFAPGTPPAVTSGHRPRY---- 644
            .||..|.....|:.:::|.  ::....::.|:..||.:::: |||.....|.:.:...|..    
  Rat   351 ETLLELGEIPTLKTLQVFG--IVPDGTLQLLREALPRLQINCAYFTSIARPTMDNKKNPEIWGIK 413

  Fly   645 CR 646
            ||
  Rat   414 CR 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 19/48 (40%)
leucine-rich repeat 280..307 CDD:275381 7/31 (23%)
AMN1 <308..453 CDD:187754 31/147 (21%)
leucine-rich repeat 308..327 CDD:275381 4/20 (20%)
leucine-rich repeat 334..359 CDD:275381 4/24 (17%)
leucine-rich repeat 360..385 CDD:275381 2/24 (8%)
leucine-rich repeat 386..411 CDD:275381 8/25 (32%)
AMN1 <409..586 CDD:187754 49/182 (27%)
leucine-rich repeat 412..437 CDD:275381 7/24 (29%)
leucine-rich repeat 438..463 CDD:275381 8/24 (33%)
leucine-rich repeat 464..515 CDD:275381 12/51 (24%)
leucine-rich repeat 516..541 CDD:275381 6/24 (25%)
leucine-rich repeat 542..561 CDD:275381 5/18 (28%)
leucine-rich repeat 571..595 CDD:275381 8/23 (35%)
leucine-rich repeat 596..621 CDD:275381 4/24 (17%)
Skp2NP_001099886.1 F-box_FBXL1 97..137 CDD:438886 18/39 (46%)
leucine-rich repeat 137..167 CDD:275381 6/29 (21%)
leucine-rich repeat 183..207 CDD:275381 14/77 (18%)
AMN1 193..>345 CDD:187754 54/196 (28%)
leucine-rich repeat 208..231 CDD:275381 7/24 (29%)
leucine-rich repeat 232..257 CDD:275381 8/24 (33%)
leucine-rich repeat 258..283 CDD:275381 7/24 (29%)
leucine-rich repeat 285..311 CDD:275381 12/50 (24%)
leucine-rich repeat 312..336 CDD:275381 7/32 (22%)
leucine-rich repeat 337..356 CDD:275381 7/18 (39%)

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