DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and AT4G02735

DIOPT Version :10

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:NP_001328771.1 Gene:AT4G02735 / 28719437 AraportID:AT4G02735 Length:374 Species:Arabidopsis thaliana


Alignment Length:264 Identity:52/264 - (19%)
Similarity:101/264 - (38%) Gaps:57/264 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 AVSINPKIMESSSDSCSLSSSTTPDVGLADQQRNMAGSA----QDQSEDQSQTFLGATELDDELI 240
            :|:|.|...::..|| ::||...    |.|...|..|.:    |.|..|.:....|...:.|.||
plant    22 SVTIAPDFNQNDFDS-TISSFLL----LPDSPYNSIGCSFDRVQGQVLDSASKASGDDSVRDRLI 81

  Fly   241 KQ-----------------------------LPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALD 276
            .:                             ||.|:.::|||.||..||.:.:..|..:...::|
plant    82 DRTGKLAFLLLESTKRFSRMRATHYNYNSWSLPDELTIKVFSGLDTKSLMQASACCTMFRKCSID 146

  Fly   277 GSSWQKINLFDFQRDIEGPVIENISQRCRGFLKSLSL-------RGCQSVGDQSVRTLANHCHNI 334
            ...:..|:|....:.|...::.::..:....|:||.|       :|...........:.||...:
plant   147 PLCYSHIDLKMGGKRIFDEIVCSMIHKAGTELRSLKLGRVISSRKGSSFTSTCLTSVIRNHGGLL 211

  Fly   335 EHLDLSD--------CKKITDISTQSISRY---CSKLTAINLHSCSNITDNSLKYLSDGCPNLME 388
            ..|.|.:        .:.:..:|:.::..:   |..||.:.|.. ..:.:.:::.|::|.|.|..
plant   212 RSLQLYNRIDRNQVLMRFVISVSSSTVEAFVTSCPSLTTLKLVG-FGLKEETVRNLAEGFPKLTY 275

  Fly   389 INVS 392
            :|::
plant   276 MNLT 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box_FBXL2-like 237..281 CDD:438887 15/72 (21%)
leucine-rich repeat 280..307 CDD:275381 3/26 (12%)
AMN1 <308..453 CDD:187754 19/103 (18%)
leucine-rich repeat 308..327 CDD:275381 5/25 (20%)
leucine-rich repeat 334..359 CDD:275381 4/35 (11%)
leucine-rich repeat 360..385 CDD:275381 5/24 (21%)
leucine-rich repeat 386..411 CDD:275381 2/7 (29%)
AMN1 <409..586 CDD:187754
leucine-rich repeat 412..437 CDD:275381
leucine-rich repeat 438..463 CDD:275381
leucine-rich repeat 464..515 CDD:275381
leucine-rich repeat 516..541 CDD:275381
leucine-rich repeat 542..561 CDD:275381
leucine-rich repeat 571..595 CDD:275381
leucine-rich repeat 596..621 CDD:275381
AT4G02735NP_001328771.1 F-box_SF 113..156 CDD:459239 13/42 (31%)
leucine-rich repeat 178..210 CDD:275381 7/31 (23%)
leucine-rich repeat 211..247 CDD:275381 4/35 (11%)
leucine-rich repeat 248..272 CDD:275381 5/24 (21%)
leucine-rich repeat 273..297 CDD:275381 2/7 (29%)
Blue background indicates that the domain is not in the aligned region.

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