DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9003 and fbxl13

DIOPT Version :9

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:XP_017209779.1 Gene:fbxl13 / 101883454 ZFINID:ZDB-GENE-140106-120 Length:796 Species:Danio rerio


Alignment Length:510 Identity:134/510 - (26%)
Similarity:213/510 - (41%) Gaps:126/510 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 QDQSEDQSQTFLGATELD-DELIKQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQK 282
            :|..|.|:.   |..:.| .:.:..||..:.|::|..|.|..|.:|||||:.|..:....|.|.:
Zfish   204 RDMKESQNS---GIPQGDGQDNLSLLPNRLFLKIFQSLGVRDLLKCAQVCQSWKAITQISSLWTE 265

  Fly   283 INLFDFQRDIEGPVIENISQRCRGFLKSLSLRGCQSVGDQSVRTLA------------------- 328
            |:.......|...::|.|.:..|.::.|::|.||..|...|.|.::                   
Zfish   266 IDFSPESSWITDQMVERILRLHRVYVISVNLCGCNMVQRLSFRRISTFTFIYQTTAFIFCFVNLI 330

  Fly   329 ---------NHCHNIEHLDLSDCKKITDISTQSISRYCSKLTAINLHSCSNITDNSLKYL-SDGC 383
                     ..|.|::.||||:|..:.|.:.:.|...|..|.::|| :|::|.:.::|.| |..|
Zfish   331 KIQNTFVFKGQCRNLQELDLSECPTVNDENMKMILEGCQSLLSLNL-ACTHIANATIKVLASRCC 394

  Fly   384 PNLMEINVSWCHLISENGVEAL--ARGCVKLRKFSSKGCKQINDNAIMCLAKYCPDL--MVLN-- 442
            ..|..:|:::|...|:.|::.|  ..||.:||..:..||.||..:....:|:.|..|  :|||  
Zfish   395 VMLRSLNLAYCIHFSDKGLQYLTTGTGCRRLRHLNLSGCSQITVDGFTSVAETCNSLQQIVLNDL 459

  Fly   443 -----------------------------------------------LHSCETITDSSIRQLAAN 460
                                                           :...:.|||||::.|..:
Zfish   460 PTLTDICVQVLVSRCRMLTVISLLESLNLSDVAFKAVAEVIDLTKILIEGNDVITDSSVKALCRS 524

  Fly   461 CHKLQKLCVSKCADLTDLTLLSLSQHNHLLNTLEVSGCRNFTDIGFQAL--GRNCKYLERMDLEE 523
            |.||.:|.:|.|..:||....:|.....|.| |.:|||...||:|...:  |.:...|..:||..
Zfish   525 CLKLSELHLSCCPRVTDACFKTLGNLTKLCN-LNISGCFKVTDMGLHYITEGPSAGQLRELDLSY 588

  Fly   524 CSQITDLTLAHLATGCPSLEKLTLSHCELITDDGIRHLTTGSCAAEILSVLELD----------- 577
            |.:||||:|..::..|.||..|.|..||.:||:|.      .|..:..|::.||           
Zfish   589 CLKITDLSLRRISQKCISLTNLALCFCENLTDNGF------ECLDKCSSLISLDISGCKIHDKGL 647

  Fly   578 ---------------NCPLITDRTLEHLVSCHNLQRIELFD-CQLITRTAIRKLK 616
                           .|..|||..::  :.|...||:||.| ||.: |.:.|.:|
Zfish   648 SALGANPSLRKLSAAECVFITDIGIK--MFCRLCQRLELLDVCQCV-RLSDRAIK 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box-like 240..285 CDD:289689 16/44 (36%)
leucine-rich repeat 280..307 CDD:275381 6/26 (23%)
AMN1 <308..453 CDD:187754 49/226 (22%)
leucine-rich repeat 308..327 CDD:275381 7/18 (39%)
leucine-rich repeat 334..359 CDD:275381 8/24 (33%)
leucine-rich repeat 360..385 CDD:275381 9/25 (36%)
leucine-rich repeat 386..411 CDD:275381 8/26 (31%)
AMN1 <409..586 CDD:187754 65/255 (25%)
leucine-rich repeat 412..437 CDD:275381 8/24 (33%)
leucine-rich repeat 438..463 CDD:275381 11/75 (15%)
leucine-rich repeat 464..515 CDD:275381 17/52 (33%)
leucine-rich repeat 516..541 CDD:275381 10/24 (42%)
leucine-rich repeat 542..561 CDD:275381 8/18 (44%)
leucine-rich repeat 571..595 CDD:275381 8/49 (16%)
leucine-rich repeat 596..621 CDD:275381 10/22 (45%)
fbxl13XP_017209779.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170588043
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2139
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.870

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