DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9003 and fbxl20

DIOPT Version :9

Sequence 1:NP_001097271.1 Gene:CG9003 / 36244 FlyBaseID:FBgn0033639 Length:651 Species:Drosophila melanogaster
Sequence 2:XP_004918731.1 Gene:fbxl20 / 100491064 XenbaseID:XB-GENE-979487 Length:516 Species:Xenopus tropicalis


Alignment Length:499 Identity:262/499 - (52%)
Similarity:341/499 - (68%) Gaps:23/499 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 TIWRSATFGSATPVINPLPAVSINPKIMESSSDSCS------LSSSTTPDVGLADQQRNMAGSAQ 219
            |.|.....|....|..|.|   |.|..:.....:..      |.:.|.     |..:|:|.|..:
 Frog    33 THWHFRAQGPGPSVTAPPP---IGPHYIRCEPGNSGEKGPQHLVTHTA-----APMRRDMNGVTK 89

  Fly   220 DQSEDQSQTFLGATELDDELI-KQLPKEVLLRVFSYLDVVSLCRCAQVCKYWNVLALDGSSWQKI 283
            .:.|..|..       |:.|| |:||||:|||:||:||||:|||||||.:.|||||||||:||:|
 Frog    90 SRFEMFSNN-------DEALINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRI 147

  Fly   284 NLFDFQRDIEGPVIENISQRCRGFLKSLSLRGCQSVGDQSVRTLANHCHNIEHLDLSDCKKITDI 348
            :||||||||||.|:||||:||.|||:.||||||..|||.::||.|.:|.|||.|:|:.|.||||.
 Frog   148 DLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDA 212

  Fly   349 STQSISRYCSKLTAINLHSCSNITDNSLKYLSDGCPNLMEINVSWCHLISENGVEALARGCVKLR 413
            ::.|:|::||||..::|.||::||:.|||.:|:|||.|.::|:|||..||::|::||.:||..||
 Frog   213 TSTSLSKFCSKLRQLDLASCTSITNLSLKAISEGCPQLEQLNISWCDQISKDGIQALVKGCGGLR 277

  Fly   414 KFSSKGCKQINDNAIMCLAKYCPDLMVLNLHSC-ETITDSSIRQLAANCHKLQKLCVSKCADLTD 477
            ..|.|||.|:.|.|:..:..:||:|:.|||.:| :.|||..:..:...|||||.||.|.|:::||
 Frog   278 LLSLKGCTQLEDEALKFIGSHCPELVTLNLQACSQQITDDGLITICRGCHKLQSLCASGCSNITD 342

  Fly   478 LTLLSLSQHNHLLNTLEVSGCRNFTDIGFQALGRNCKYLERMDLEECSQITDLTLAHLATGCPSL 542
            ..|.:|.|:...|..|||:.|...||:||..|.:||..||:||||||.||||.||..|:..||.|
 Frog   343 SILNALGQNCPRLRILEVARCSQLTDLGFTTLAKNCHELEKMDLEECVQITDSTLIQLSIHCPRL 407

  Fly   543 EKLTLSHCELITDDGIRHLTTGSCAAEILSVLELDNCPLITDRTLEHLVSCHNLQRIELFDCQLI 607
            :.|:|||||||||||||||..|:||.:.|.|:||||||||||.:||||.||.:|:||||:|||.|
 Frog   408 QVLSLSHCELITDDGIRHLGNGACAHDRLEVIELDNCPLITDASLEHLKSCQSLERIELYDCQQI 472

  Fly   608 TRTAIRKLKNHLPNIKVHAYFAPGTPPAVTSGHRPRYCRCCEIL 651
            :|..|::|:.|||||||||||||.|||....|.|.|:||||.||
 Frog   473 SRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCAIL 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9003NP_001097271.1 F-box-like 240..285 CDD:289689 34/45 (76%)
leucine-rich repeat 280..307 CDD:275381 20/26 (77%)
AMN1 <308..453 CDD:187754 73/145 (50%)
leucine-rich repeat 308..327 CDD:275381 11/18 (61%)
leucine-rich repeat 334..359 CDD:275381 12/24 (50%)
leucine-rich repeat 360..385 CDD:275381 12/24 (50%)
leucine-rich repeat 386..411 CDD:275381 12/24 (50%)
AMN1 <409..586 CDD:187754 95/177 (54%)
leucine-rich repeat 412..437 CDD:275381 10/24 (42%)
leucine-rich repeat 438..463 CDD:275381 9/25 (36%)
leucine-rich repeat 464..515 CDD:275381 23/50 (46%)
leucine-rich repeat 516..541 CDD:275381 16/24 (67%)
leucine-rich repeat 542..561 CDD:275381 15/18 (83%)
leucine-rich repeat 571..595 CDD:275381 18/23 (78%)
leucine-rich repeat 596..621 CDD:275381 14/24 (58%)
fbxl20XP_004918731.1 F-box-like 107..149 CDD:289689 32/41 (78%)
leucine-rich repeat 144..171 CDD:275381 20/26 (77%)
AMN1 172..369 CDD:187754 93/196 (47%)
leucine-rich repeat 172..197 CDD:275381 14/24 (58%)
leucine-rich repeat 198..220 CDD:275381 11/21 (52%)
leucine-rich repeat 224..249 CDD:275381 12/24 (50%)
leucine-rich repeat 250..275 CDD:275381 12/24 (50%)
leucine-rich repeat 276..301 CDD:275381 10/24 (42%)
AMN1 299..474 CDD:187754 100/174 (57%)
leucine-rich repeat 302..328 CDD:275381 9/25 (36%)
leucine-rich repeat 329..354 CDD:275381 11/24 (46%)
leucine-rich repeat 355..380 CDD:275381 12/24 (50%)
leucine-rich repeat 381..406 CDD:275381 16/24 (67%)
leucine-rich repeat 407..429 CDD:275381 17/21 (81%)
leucine-rich repeat 436..455 CDD:275381 14/18 (78%)
leucine-rich repeat 461..486 CDD:275381 14/24 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 131 1.000 Domainoid score I5138
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68784
Inparanoid 1 1.050 520 1.000 Inparanoid score I1239
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1046098at2759
OrthoFinder 1 1.000 - - FOG0002896
OrthoInspector 1 1.000 - - oto105071
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1911
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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