DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Egm and Gcdh

DIOPT Version :9

Sequence 1:NP_610687.1 Gene:Egm / 36242 FlyBaseID:FBgn0086712 Length:639 Species:Drosophila melanogaster
Sequence 2:NP_001038209.2 Gene:Gcdh / 270076 MGIID:104541 Length:447 Species:Mus musculus


Alignment Length:526 Identity:106/526 - (20%)
Similarity:190/526 - (36%) Gaps:149/526 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRPNLFSG-------ASRLLTYSRNGKLLTRGRSTKATSSSLDSQHQDAATTEGGRAESVEESPE 58
            |.|.:.:|       ::|||: .|:|  |...|..:..||:       ||.||   ...:..:..
Mouse     1 MVPAMLTGYMSLRGVSARLLS-RRSG--LRFPRFPRTWSSA-------AAHTE---KTQIRPAKS 52

  Fly    59 QQRKLPTREPLAKNFFIGVVDKELLAYPEVIPRDEMAQ------LENSLLPLKNYFVEPRETEET 117
            .:.....::||       :::::|.|..::| ||....      :...||..:|.........| 
Mouse    53 SRPVFDWKDPL-------ILEEQLTADEKLI-RDTFRNYCQERLMSRILLANRNEVFHRDIVYE- 108

  Fly   118 SPETLRQLGLYGLNVSTDYEGKGYGWSA------SLMASEPDSTD------INVTLGLQTHRVVV 170
                :.:||:.|..:      ||||.:.      .|:..|.:..|      ::|...|..|.:..
Mouse   109 ----MGELGVLGPTI------KGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYT 163

  Fly   171 DLLKEVGTPLQQQRYLQDLATGKLIG----TEAIYEISPPEEDYFNTTAELFPEYGKWQLNGEKS 231
                 .|:..|:|:||..||.|:|:|    ||..:...|   ....|.|...|....:.|:|.|:
Mouse   164 -----YGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDP---GGMETRARHNPSNQSYTLSGTKT 220

  Fly   232 FVICTPGERQLFLVLAQTQQPNVPGVLGRGTTIFLVDSQQEGVRLGEKHATFGCRKAEIRRVHFE 296
            ::..:| ...||:|.|:.:...:.|        |:::....|:........|..|.:....:..:
Mouse   221 WITNSP-VADLFIVWARCEDNCIRG--------FILEKGMRGLSAPRIEGKFSLRASATGMIIMD 276

  Fly   297 GVKLGEDQVVGLPHDGNRYSEQLVRSSRLRGSLVG----------------LSLAKKLLNELAQY 345
            .|::.|:.|  ||:               ..||.|                |..|:..|:...||
Mouse   277 SVEVPEENV--LPN---------------VSSLAGPFGCLNTARYGITWGVLGAAEFCLHTARQY 324

  Fly   346 TVNTTQCGVQLQDLELTRIHMSRAMCSVYAMESMLYLTAGL-----LDEFRAQDVTLESAIT--K 403
            .::..|.||.|...:|.:..::         :.:..:|.||     |...:.||......::  |
Mouse   325 ALDRIQFGVPLARNQLVQKKLA---------DMLTEITLGLHACLQLGRLKDQDKATPEMVSMLK 380

  Fly   404 YFTLRQVYAIASQNLGVVGPKSLLSGETTELGLRDAAQLCTQGESLDTLGMF------------I 456
            .....:...||.|      .:.:|.|.    |:.|...:.....:|:.:..:            .
Mouse   381 RNNCGKALDIARQ------ARDILGGN----GISDEYHVIRHAMNLEAVNTYEGTHDIHALILGR 435

  Fly   457 ALTGLQ 462
            |:||:|
Mouse   436 AITGIQ 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EgmNP_610687.1 ACAD 92..457 CDD:173838 80/421 (19%)
CaiA 122..439 CDD:224871 73/355 (21%)
GcdhNP_001038209.2 GCD 57..443 CDD:173840 90/457 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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