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Protein Alignment Egm and Ivd

DIOPT Version :9

Sequence 1:	NP_610687.1	Gene:	Egm / 36242	FlyBaseID:	FBgn0086712	Length:	639	Species:	Drosophila melanogaster
Sequence 2:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus

Alignment Length:	429	Identity:	91/429 - (21%)
Similarity:	165/429 - (38%)	Gaps:	62/429 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 EQQRKLPTREPLAKNFFIGVVDKELLAYPEVIPRDEMAQLENSLLPLKNYFVEPRETEETSPETL 122
            |:|::|  |..::|  |:    :|.||     |:.:.....|....|:.::           :.|
  Rat    45 EEQKQL--RHTISK--FV----QENLA-----PKAQEIDQSNDFKNLREFW-----------KQL 85

  Fly   123 RQLGLYGLNVSTDYEGKGYGWSASLMASEP---DSTDINVTLGLQTHRVVVDLLKEVGTPLQQQR 184
            ..||:.|:.....|.|.|.|:...::..|.   .|..:.::.|..::..:..:::. |...|:::
  Rat    86 GSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRN-GNEAQKEK 149

  Fly   185 YLQDLATGKLIGTEAIYEISPPE--EDYFNTTAELFPEYGKWQLNGEKSFVICTPGERQLFLVLA 247
            ||..|.:|:.||..|   :|.|.  .|..:...:...:...:.|||.|.::...| :..:.:|.|
  Rat   150 YLPKLISGEFIGALA---MSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGP-DADVLVVYA 210

  Fly   248 QTQQPNVPGVLGRGTTIFLVDSQQEGVRLGEKHATFGCRKAEIRRVHFEGVKLGEDQVVGLPHDG 312
            :|....||.  .||.|.|:|:....|....:|....|.|.:....:.||..|:....::.....|
  Rat   211 KTDLTAVPA--SRGITAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKG 273

  Fly   313 ------NRYSEQLVRSSRLRGSLVGLSLAKKLLNELAQYTVNTTQCGVQLQDLELTRIHMSRAMC 371
                  ....|:||    |.|..:|:..|  :|:....|.......|.::...:|.:..|:....
  Rat   274 VYVLMSGLDLERLV----LAGGPLGIMQA--VLDHTIPYLHVREAFGQKIGQFQLMQGKMADMYT 332

  Fly   372 SVYAMESMLYLTAGLLDE--FRAQDVTLESAITKYFTLRQVYAIASQNLGVVGPKSLLSGETTEL 434
            .:.|....:|..|...||  ..|:|    .|....:|......:|...:..:|....::......
  Rat   333 RLMACRQYVYNVARACDEGHITAKD----CAGVILYTAECATQVALDGIQCLGGNGYINDFPMGR 393

  Fly   435 GLRDAAQLCTQGESLDTLGMFIALTGLQHAGQAMNTGVR 473
            .||||......|.:.:...:.|        |:|.|...|
  Rat   394 FLRDAKLYEIGGGTSEVRRLVI--------GRAFNADFR 424

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.