DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tou and Pbrm1

DIOPT Version :9

Sequence 1:NP_001097270.1 Gene:tou / 36241 FlyBaseID:FBgn0033636 Length:3131 Species:Drosophila melanogaster
Sequence 2:XP_006252748.1 Gene:Pbrm1 / 306254 RGDID:1565549 Length:1726 Species:Rattus norvegicus


Alignment Length:2072 Identity:353/2072 - (17%)
Similarity:641/2072 - (30%) Gaps:760/2072 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1174 RRRQHMSLIRML-------ELRRKFEDREKKKHQLVLDRLLLRERRMAERKRDAEILQLIRRPNE 1231
            |:|:.:|.:..:       ||.....|.:.::.:|:.:..:    |..:|:...:..:::.:|.:
  Rat    54 RKRRRLSSLPTVDPIAVCHELYNTIRDYKDEQGRLLCELFI----RAPKRRNQPDYYEVVSQPID 114

  Fly  1232 DSEMPQELVIPELDRIAGNRLPGQAMADLLMVFEFLHNFGETLGFDMESLPSLQNLH----DALM 1292
            ..::.|:|.:.|.|.|  |.|    .||..::|.....:.:....:.::...|.:|:    :..:
  Rat   115 LMKIQQKLKMEEYDDI--NLL----TADFQLLFNNAKAYYKPDSPEYKAACKLWDLYLRTRNEFV 173

  Fly  1293 SDSNADAEEELLSVMTHLLVCAIEDPGVPNPGRHTTLLGQSLRNADITNSNVSEILRIYLYA--T 1355
            ....||.|::             ::.|..|.|  |...|.|       ...:.|||...|.|  .
  Rat   174 QKGEADDEDD-------------DEDGQDNQG--TMADGSS-------PGYLKEILEQLLEAIVV 216

  Fly  1356 ATGEVRQMHGITVDRERERRVPDHHQLDSDTTTHSHSVKNQEYYKLLHEN-DTWKLSQSLKDRPF 1419
            ||....::..     |..:::|.             .|:..:||.::.|. |...::|.:::..:
  Rat   217 ATNPSGRLIS-----ELFQKLPS-------------KVQYPDYYAIIKEPIDLKTIAQRIQNGSY 263

  Fly  1420 VALNPTRKAQMLAHLCNDLLMNKAVLRQIDGSLETCAQMRKEKYMTDMKVRKYKALHMRKARIEA 1484
            .:::...|.       .|||...|......||     |:.|:  ...:|    |..:|:||.||.
  Rat   264 KSIHAMAKD-------IDLLAKNAKTYNEPGS-----QVFKD--ANSIK----KIFYMKKAEIEH 310

  Fly  1485 YERAQAEREAAMQALMAQQKLDAERLKAEEEAKAAAAEE--AAAAAGTDGEATKGG--SPNGEKP 1545
            :|..::...     :.....|.|.||......|::..||  ..:....:..|.:||  |......
  Rat   311 HEMTKSSLR-----IRTATNLAAARLTGPSHNKSSLDEERNPTSKCYRNKRAVQGGRLSAITMAL 370

  Fly  1546 EDGDQNEEGAAKEPQQQQQQPMEVDGVVDEASLVSPAKTIIQTDNSL--------------TPSK 1596
            :.|.::||.||....:.::...|.:.:.....:.:|...:..|..|.              .|||
  Rat   371 QYGSESEEDAALAAARYEEGESEAESITSFMDVSNPFHQLYDTVRSCRNNQGQLIAEPFFHLPSK 435

  Fly  1597 QDMPTPTYQINGSSTPTTSGVTGGDMNVLLQAKKSGARNSINDEHHH---DVSII---------- 1648
            :..|....||.              |.:.||..::..:|...:...|   |::::          
  Rat   436 KKYPDYYQQIK--------------MPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVP 486

  Fly  1649 ------------------------DDDLSDLDSEITNVEEDEDN----------------RLSAD 1673
                                    .||:.|.||.|::...|..:                |||:.
  Rat   487 NSAIYKRVLKLQQVMQAKKKELARRDDIEDGDSMISSATSDTGSAKRKRNTHDSEMLGLRRLSSS 551

  Fly  1674 E--LQKKLDKIVRASLN-CKEALEKSTNQLRAACFGQDRFWRRYWKLPKAGGIFIEALESAQNDI 1735
            :  ::|:..||:   .| ..||.|..:.  |..|   |.|                .::.::.|.
  Rat   552 KKNIRKQRMKIL---FNVVLEAREPGSG--RRLC---DLF----------------MVKPSKKDY 592

  Fly  1736 CDYHE-ALEAMDDKKDANDEKENSENEKDVAAESSEQPMEVDESITKLEDGVPASDVGMPESNQ- 1798
            .||:: .||.||.|    ..:.|..|:|                        .|.:.||.|..: 
  Rat   593 PDYYKIILEPMDLK----IIEHNIRNDK------------------------YAGEEGMMEDMKL 629

  Fly  1799 --QNA-HQDEED----DDDDVTE--INKVEPEIVDLGDDDDDAAPPL---------PKIE----- 1840
              :|| |.:||.    :|..:.|  :.....|:..|.||||.|:|.|         ||..     
  Rat   630 MFRNARHYNEEGSQVYNDAHILEKLLKDKRKELGPLPDDDDMASPKLKLSRKSGVSPKKSKYMTP 694

  Fly  1841 ------------------------------PPRPE-----IKVKSEMELMGPPPTTMISTKTDFE 1870
                                          |.|.|     :.:|..|::.......|.:...|.:
  Rat   695 MQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDID 759

  Fly  1871 AEIKIPSMPGILMPPTLNNNNTNNNNNN--------------------NGSDNCDKLETGLGLGQ 1915
            :.::    ..::|   .||..|.|...:                    .|.::.......|.:.:
  Rat   760 SMVE----DFVMM---FNNACTYNEPESLIYKDALVLHKVLLETRRDLEGDEDSHVPNVTLLIQE 817

  Fly  1916 QQQNFSQSVIKTEDVKKEDDCI---IVSTSSVDDT-----PKWFSIVRREVPLISELPAEEGGVV 1972
            ...|...||:..:|  .|..|.   :....:||..     |..|.|:|:.|              
  Rat   818 LIHNLFVSVMSHQD--DEGRCYSDSLAEIPAVDPNFPSRPPLTFDIIRKNV-------------- 866

  Fly  1973 GQELQISYANQNCSAQLQL-QGHPWDLINNMQYYSIPMDECKVDTSKLGNECIFSLSGLDEKQML 2036
                     ..|...:|.| |.|.::::...:..:....|...|..:|             :|..
  Rat   867 ---------ESNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVEL-------------QQFF 909

  Fly  2037 AKVEEYKAHKVESKNG--LGSPHRHHETK----DDEEQAKLKLDKEIDTEMETDADDLAGKEKFF 2095
            .::.:...     |||  |.||...:.||    |.|::.|.||.|||      :.|.|..:|:  
  Rat   910 IRIRDELC-----KNGEILLSPALSYTTKHLHNDVEKEKKEKLPKEI------EEDKLKREEE-- 961

  Fly  2096 RLRSDVPPDTGG--GVSEGTDVKPKIELRLDEALSQAYYHNIA-NMSLSSVQTYIPIDIPLPLSM 2157
            :..::...|:.|  |:|               .|.:.|..:.: ..|:..|..|:.:: |...::
  Rat   962 KREAEKSEDSSGTTGLS---------------GLHRTYSQDCSFKNSMYHVGDYVYVE-PAEANL 1010

  Fly  2158 TPDEHRLLEQVKLAGFPERVHGVYVPR--------RQRYGWWQLDDEQKLRQLLKTLNPSGLRER 2214
            .|                  |.|.:.|        :..||.|.....:......:..    |.:.
  Rat  1011 QP------------------HIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKF----LEKE 1053

  Fly  2215 ELQENLQRFLGLEQPLGVNYKLKSDIDFPEEF--LMPDKKGDWNPKVAKRVELALIEQLESLEDK 2277
            ..:.:....:.:.:.||     |..:.|.:|:  |.|:...|.:..|.           ||....
  Rat  1054 VFKSDYYNKVPVSKILG-----KCVVMFVKEYFKLCPETFRDEDVFVC-----------ESRYSA 1102

  Fly  2278 VASASMQLKNWQLPNRVESELTLDSQEDVTEEDFVSIIPMIRERIIDLEANIERRYLKPPLGSQT 2342
            ...:..::|.|.:|        :.|...|..:     :|:...|:..:.||.::           
  Rat  1103 KTKSFKKIKLWTMP--------ISSVRFVPRD-----VPLPVVRVASVFANADK----------- 1143

  Fly  2343 GDAHLAVIAQNQHTTTQTQNSASAAAYLLQMQQQQQQQQLAQQQQQQQQGSGAGNSLNPSSFNER 2407
            ||        .:.:|..:.::.:..::.|:.:::....:::       .|....:......:|:.
  Rat  1144 GD--------EEKSTDNSDDNRAEDSFNLEKEKEDVPVEMS-------NGEPGCHYFEQLRYNDM 1193

  Fly  2408 TMALAAAAAASGPGNATGVANSAVVAGATPCESGSGEPNSGNASPASNCDSD---------RDEK 2463
            .:.:         |:...:.:..:|           .|..|........|..         ..|:
  Rat  1194 WLKV---------GDCVFIKSHGLV-----------RPRVGRIEKVWVRDGAAYFYGPIFIHPEE 1238

  Fly  2464 VEQIPKGLVQWRDA-VSRSHTTAQLAMALYVLESCVAW--------------DKSIMKAYATKNK 2513
            .|..|..:...::. :|....|..::.   :|..|...              :..|:...:..|:
  Rat  1239 TEHEPTKMFYKKEVFLSNLEETCPMSC---ILGKCAVLSFKDFLSCRPTEIPENDILLCESRYNE 1300

  Fly  2514 SSKKKS----------SAK----------KQATPSKKQQQKKNKKEQQLTPN------------- 2545
            |.|:..          |||          |...|.|:......||.|.|...             
  Rat  1301 SDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIIPQKEPSPLLEKKIQLLEAKFAELEGGDDDTEE 1365

  Fly  2546 -GKE-SKSKSAINKPENQAPLSIKINLKALAQNGQCLLKTKTPPILTKSPTASPSSHPNTSDSDS 2608
             |:| |:.....:.|:.|.||:.:::|                     .|...|.|.|.::    
  Rat  1366 MGEEDSEVIEPPSLPQLQTPLANELDL---------------------MPYTPPQSTPKSA---- 1405

  Fly  2609 DFGKRTKKKSGGKRRRSANNTNSSKYSNSLQNCQFCTSGENEDKLLLCDGCDKGYHTYCFKPKMD 2673
               |.:.||...||:     .|.|                             ||..:       
  Rat  1406 ---KGSAKKESSKRK-----INMS-----------------------------GYILF------- 1426

  Fly  2674 NIPDGDWYCYECVNKATNERKCIVCGGHRPSPVGKMIYCDLCPRAYHADCYIPPLLKVPRGKWYC 2738
                            ::|.:.::                   :|.|.|.....|.::...:|  
  Rat  1427 ----------------SSEMRAVI-------------------KAQHPDYSFGELSRLVGTEW-- 1454

  Fly  2739 HGCISRAPPPKKRSAGGTSGSSSKSRRDRDRESGGSAKRRSDNSKTPA------------MEHMQ 2791
                 |.....|::......:.:..:::|:|.:.......|..:.||.            |..:.
  Rat  1455 -----RNLETAKKAEYEERAAKAAEQQERERAAQQQQPSASPRAGTPVGALMGVVPPPTPMGMLN 1514

  Fly  2792 QQQMPLAGGDSHHHHHQQPPSLNSSHDESMNSLPAAPL-SPAHSVVSATNYDDQHHANNSVDGSS 2855
            ||..|:||....:     ||.|             .|| .|...:||..:....|.....     
  Rat  1515 QQLTPVAGMMGGY-----PPGL-------------PPLQGPVDGLVSMGSMQPLHPGGPP----- 1556

  Fly  2856 RFHAHLIPPSNNGTAALLEDVPGGANVMPGVYPVYTPVAAGNFSAGLINQ-------APVQPAMP 2913
               .|.:||.          |||    :||:.|           .|::||       .|.....|
  Rat  1557 ---PHHLPPG----------VPG----LPGIPP-----------PGVMNQGVTPMVGTPAPGGSP 1593

  Fly  2914 FANVVAMSPRAVTPTRTRTPTPTPAPTPPPP-----PPTPLLMQASP-TATALHVNA 2964
            :...|.:    :.|...:.|.|.|.|.|..|     |.||:.:...| |...||..|
  Rat  1594 YGQQVGV----LGPPGQQAPPPYPGPHPTGPPVIQQPTTPMFVAPPPKTQRLLHSEA 1646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
touNP_001097270.1 HAT_MBD 953..1027 CDD:238691
ZapA 1021..1127 CDD:294720
MAP7 1043..1198 CDD:283355 6/30 (20%)
RILP-like 1085..>1179 CDD:304877 2/4 (50%)
DDT 1255..1317 CDD:280886 8/65 (12%)
WHIM1 1406..1455 CDD:292246 9/48 (19%)
WHIM3 2190..2224 CDD:292248 2/33 (6%)
PHD_BAZ2A_like 2640..2685 CDD:277020 2/44 (5%)
RanBP2-type Zn finger 2640..2659 CDD:275375 0/18 (0%)
RanBP2-type Zn finger 2680..2698 CDD:275376 1/17 (6%)
PHD 2695..2744 CDD:279022 5/48 (10%)
Bromo_BAZ2A_B_like 3027..3123 CDD:99935
Pbrm1XP_006252748.1 Bromo_polybromo_I 65..177 CDD:99954 19/121 (16%)
Bromo_polybromo_II 203..305 CDD:99948 27/137 (20%)
Bromo_polybromo_III 404..505 CDD:99951 15/114 (13%)
Bromo_polybromo_IV 556..659 CDD:99949 33/154 (21%)
Bromo_polybromo_V 695..799 CDD:99946 12/110 (11%)
Bromo_polybromo_VI 812..919 CDD:99956 23/149 (15%)
BAH_polybromo 994..1111 CDD:240068 22/155 (14%)
BAH_polybromo 1192..1310 CDD:240068 16/140 (11%)
HMG-box 1417..1481 CDD:238037 13/146 (9%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.