DRSC/TRiP Functional Genomics Resources

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Protein Alignment tou and Chd4

DIOPT Version :9

Sequence 1:NP_001097270.1 Gene:tou / 36241 FlyBaseID:FBgn0033636 Length:3131 Species:Drosophila melanogaster
Sequence 2:XP_006237458.1 Gene:Chd4 / 117535 RGDID:620064 Length:1956 Species:Rattus norvegicus


Alignment Length:557 Identity:112/557 - (20%)
Similarity:193/557 - (34%) Gaps:187/557 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  2285 LKNWQLPNRVESELTLDSQEDVTEEDFVSI-------------IPMIRERIIDLEANIERRYLKP 2336
            |.|...|...|:|  .|.:||::|.:...:             ||..:.:      ..||..|..
  Rat    24 LNNSLPPPHPENE--DDPEEDLSEAETPKLKKKKKPKKPRDPKIPKSKRQ------KKERLLLCR 80

  Fly  2337 PLGSQTGDAHLAVIAQNQHTTTQTQNSAS----AAAYLLQMQQQQQQQQLAQQQQQQQQGSGAGN 2397
            .||..:|:.. ..:.:::....::.:..|    ......::..:::::..:::::::::.....:
  Rat    81 QLGDSSGEGP-EFVEEDEEAALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDD 144

  Fly  2398 SLNPSS----------------FNE---RTMA--------LAAAAAASGPGNATGVANSAVVAGA 2435
            |..|.|                |:|   ||:.        :....||..|..|  |:...:|.||
  Rat   145 SKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIA--VSKMMMVLGA 207

  Fly  2436 TPCESGSGEPNSGNASPASNCDSDRDEKVEQIPKGLVQWRDAVSRSHTTAQLAMALYVLESCVAW 2500
            ...|..:..|..|:                             |.:...|..|.|:.|:||.|. 
  Rat   208 KWREFSTNNPFKGS-----------------------------SGASVAAAAAAAVAVVESMVT- 242

  Fly  2501 DKSIMKAYATKNKSSK-------KKSSAKKQATPSKKQQQKKNKKEQQLTPNGKESKSKSAINKP 2558
                    ||:.....       :|:..|:...|:.:::.|.:.:    .|:.|:.       ||
  Rat   243 --------ATEVAPPPPPVEVPIRKAKTKEGKGPNARRKPKGSPR----VPDAKKP-------KP 288

  Fly  2559 ENQAPLSIKINLKALAQNGQCLLKTKTPPILTKSPTASPSSHPNTSDSDSDF------------G 2611
            :..|||.||:        |....|.|           ..||..:..|.:|||            |
  Rat   289 KKVAPLKIKL--------GGFGSKRK-----------RSSSEDDDLDVESDFDDASINSYSVSDG 334

  Fly  2612 KRTKKKSGGKRRRSANNTNSSK--------YSNSLQN-CQFCTSGENEDKLLLCDGCDKGYHTYC 2667
            ..::.....|:.|:|......:        |....|: |:.|..|   .:::|||.|.:.||..|
  Rat   335 STSRSSRSRKKLRTAKKKKKGEEEVTAVDGYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVC 396

  Fly  2668 FKPKMDNIPDGDWYCYECVNKATN-ERK---------------------------CIVCGGHRPS 2704
            ..|.|:..|:|.|.|..|..:... |.|                           |.||     .
  Rat   397 LDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEGEEILEEVGGDPEEEDDHHMEFCRVC-----K 456

  Fly  2705 PVGKMIYCDLCPRAYHADCYIPPLLKVPRGKWYCHGC 2741
            ..|:::.||.||.:||..|..|||.::|.|:|.|..|
  Rat   457 DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
touNP_001097270.1 HAT_MBD 953..1027 CDD:238691
ZapA 1021..1127 CDD:294720
MAP7 1043..1198 CDD:283355
RILP-like 1085..>1179 CDD:304877
DDT 1255..1317 CDD:280886
WHIM1 1406..1455 CDD:292246
WHIM3 2190..2224 CDD:292248
PHD_BAZ2A_like 2640..2685 CDD:277020 16/45 (36%)
RanBP2-type Zn finger 2640..2659 CDD:275375 6/19 (32%)
RanBP2-type Zn finger 2680..2698 CDD:275376 6/45 (13%)
PHD 2695..2744 CDD:279022 19/47 (40%)
Bromo_BAZ2A_B_like 3027..3123 CDD:99935
Chd4XP_006237458.1 CHDNT 164..216 CDD:285335 13/53 (25%)
PHD1_CHD_II 372..414 CDD:277006 16/44 (36%)
PHD2_CHD_II 451..493 CDD:277007 18/46 (39%)
CHROMO <540..577 CDD:237991
CHROMO 622..676 CDD:214605
SNF2_N 729..1025 CDD:278600
DEXDc 746..904 CDD:238005
Helicase_C 1068..1164 CDD:278689
DUF1087 1302..1352 CDD:283996
DUF1086 1413..1549 CDD:283992
CHDCT2 1770..1940 CDD:285336
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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