DRSC/TRiP Functional Genomics Resources

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Protein Alignment en and Hoxa5

DIOPT Version :9

Sequence 1:NP_523700.2 Gene:en / 36240 FlyBaseID:FBgn0000577 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_077365.1 Gene:Hoxa5 / 79241 RGDID:620609 Length:381 Species:Rattus norvegicus


Alignment Length:236 Identity:73/236 - (30%)
Similarity:101/236 - (42%) Gaps:61/236 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 GQPAAPTMTQPPLSSSASSLASPPP------ASNASTISSTSSVATSSSSSSSGCSSAASSLNSS 365
            |..|||  .:|..|..|:|..||||      |...|..|.:.....:|..:|||.|:.|.|.:.|
  Rat   187 GASAAP--AEPRYSQPATSTHSPPPDPLPCSAVAPSPGSDSHHGGKNSLGNSSGASANAGSTHIS 249

  Fly   366 PSSRLG---ASGSGVNASSPQ------PQPIPPPSAVSRDSGMESSDDTRSETGSTTTEGGKNEM 421
            ....:|   |:.....|||.|      |.|.||                           .:.::
  Rat   250 SREGVGTASAAEEDAPASSEQAGAQSEPSPAPP---------------------------AQPQI 287

  Fly   422 WPAWVYCTRYSDRPSSGPRYRRPKQPKDKTNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQ 486
            :| |:.....|.....||             :.||.|||::..|...|::||:.|||||.|||.:
  Rat   288 YP-WMRKLHISHDNIGGP-------------EGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 338

  Fly   487 LSSELGLNEAQIKIWFQNKRAKIKKSTGSKNPLALQLMAQG 527
            ::..|.|:|.||||||||:|.|.||....|   ::.:.|.|
  Rat   339 IAHALCLSERQIKIWFQNRRMKWKKDNKLK---SMSMAAAG 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
enNP_523700.2 Homeobox 457..510 CDD:278475 28/52 (54%)
Engrail_1_C_sig 512..541 CDD:287495 3/16 (19%)
Hoxa5NP_077365.1 Homeobox 310..363 CDD:365835 28/52 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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