DRSC/TRiP Functional Genomics Resources

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Protein Alignment en and Hoxb5

DIOPT Version :9

Sequence 1:NP_523700.2 Gene:en / 36240 FlyBaseID:FBgn0000577 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_001178854.1 Gene:Hoxb5 / 497987 RGDID:1562292 Length:269 Species:Rattus norvegicus


Alignment Length:238 Identity:75/238 - (31%)
Similarity:111/238 - (46%) Gaps:54/238 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 SALGSLCKAVSQIGQPAAPTMTQPP---LSSSASSLASPP--PASNAS------TISSTSSVATS 347
            ||..|...||.:..: |.|...|.|   .::|:.||:||.  |.:|..      :.||.|..||.
  Rat    60 SASSSHFGAVGESSR-AFPASAQEPRFRQATSSCSLSSPESLPCTNGDSHGAKPSASSPSDQATP 123

  Fly   348 SSSSSSGCSSAASSLNSSP---SSRLGASGSGVNASSPQPQPIPPPSAVSRDSGMESSDDTRSET 409
            :|||::......:|.:|.|   :|:|    |..:.:..||:|:                    .|
  Rat   124 ASSSANFTEIDEASASSEPEEAASQL----SSPSLARAQPEPM--------------------AT 164

  Fly   410 GSTTTEGGKNEMWPAWVYCTRYSDRPSSGPRYRRPKQPKDKTNDEKRPRTAFSSEQLARLKREFN 474
            .:...||...:::| |:.....| ...:||             |.||.|||::..|...|::||:
  Rat   165 STAAPEGQTPQIFP-WMRKLHIS-HDMTGP-------------DGKRARTAYTRYQTLELEKEFH 214

  Fly   475 ENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKSTGSKN 517
            .|||||.|||.:::..|.|:|.||||||||:|.|.||....|:
  Rat   215 FNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKS 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
enNP_523700.2 Homeobox 457..510 CDD:278475 28/52 (54%)
Engrail_1_C_sig 512..541 CDD:287495 1/6 (17%)
Hoxb5NP_001178854.1 PRK07003 <67..>171 CDD:235906 31/128 (24%)
Homeobox 198..251 CDD:365835 28/52 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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