DRSC/TRiP Functional Genomics Resources

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Protein Alignment en and hoxc3

DIOPT Version :10

Sequence 1:NP_523700.2 Gene:en / 36240 FlyBaseID:FBgn0000577 Length:552 Species:Drosophila melanogaster
Sequence 2:XP_002936696.1 Gene:hoxc3 / 100190990 XenbaseID:XB-GENE-5997986 Length:394 Species:Xenopus tropicalis


Alignment Length:264 Identity:71/264 - (26%)
Similarity:104/264 - (39%) Gaps:64/264 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 IGQPAAPTMT--QPPLSSSASSLASPPPASNASTISSTSSVATSSSSSSSGCSSAASSLNSSPSS 368
            :||...|:..  |||       ...||..:|            .|:|.....|......:.|..|
 Frog    29 LGQQDYPSEDDYQPP-------FCLPPDTAN------------GSASHKGEHSIKGIDFHLSEVS 74

  Fly   369 RLGASGSGVNASSPQPQPIPPPSAVSRDSGMESSDDTRSETGSTTTEGGKNEMWPAWVYCTRYSD 433
            .........|:.||.|:.....|..|:.|....|.|..|....:.......:::| |:..||.:.
 Frog    75 EQAQQPKSPNSDSPLPKSASTQSCTSKKSTGPVSSDVTSPNKKSKGSNMPKQIFP-WMKETRQNS 138

  Fly   434 RPSSGPRYRRPKQPKDK---------TNDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSS 489
            :     :.::...|.|.         ::..||.|||:::.||..|::||:.||||...||.:::.
 Frog   139 K-----QKKQAPPPADDAPAVDSSFLSSASKRARTAYTNSQLVELEKEFHFNRYLCRPRRLEMAK 198

  Fly   490 ELGLNEAQIKIWFQNKRAKIKK---------STGSKNPLA----------LQL---------MAQ 526
            .|.|:|.||||||||:|.|.||         |.|..:|.:          |.|         ||.
 Frog   199 LLNLSERQIKIWFQNRRMKFKKDHKGKGGGGSPGGLSPSSSPSLMPYSGNLPLDGDCGYEVPMAT 263

  Fly   527 GLYN 530
            |.||
 Frog   264 GAYN 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
enNP_523700.2 Homeodomain 455..511 CDD:459649 29/55 (53%)
Engrail_1_C_sig 512..542 CDD:431338 10/38 (26%)
hoxc3XP_002936696.1 Homeodomain 164..220 CDD:459649 29/55 (53%)
DUF4074 335..392 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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