DRSC/TRiP Functional Genomics Resources

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Protein Alignment inv and hoxc6b

DIOPT Version :9

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:XP_005172831.1 Gene:hoxc6b / 58045 ZFINID:ZDB-GENE-000822-1 Length:228 Species:Danio rerio


Alignment Length:247 Identity:65/247 - (26%)
Similarity:95/247 - (38%) Gaps:74/247 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 ALSGNIGGG-----SVSGSSTGSSKNSGNTNGNRSPLKAPKKSGKPLNLAQSNAAANSSLSFSSS 357
            :||.::..|     ||:.|||           |..|::.....|..  :||:...:|...|...:
Zfish     9 SLSCHLNSGQEVLPSVAISST-----------NYDPVRHFSPYGAA--VAQNRIYSNPFYSHQEN 60

  Fly   358 LANICSNSNDSNSTATSSSTTNTSGAPVDLVKSPPPAAGAGATGAS---------GKSGEDSGTP 413
            :....|...|..|        |......|::  |....|.|.|..|         ||:.|..|:.
Zfish    61 VMFGSSRPYDYGS--------NMFYQDKDVL--PSCRQGFGQTQGSLTQDYASDQGKTMEPKGSV 115

  Fly   414 IVWPAWVYCTRYSDRPSSGRSPRARKPKKPATSSSAAGGGGGGVEKGEAADGGGVPEDKRPRTAF 478
            .::| |:                     :...|.|..|.|.               :.:|.|..:
Zfish   116 QIYP-WM---------------------QRMNSHSGVGYGS---------------DRRRGRQIY 143

  Fly   479 SGTQLARLKHEFNENRYLTEKRRQQLSGELGLNEAQIKIWFQNKRAKLKKSS 530
            |..|...|:.||:.|||||.:||.:::..|.|:|.||||||||:|.|.||.|
Zfish   144 SRYQTLELEKEFHYNRYLTRRRRIEIANTLCLSERQIKIWFQNRRMKWKKES 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeobox 474..527 CDD:278475 26/52 (50%)
Engrail_1_C_sig 529..554 CDD:287495 1/2 (50%)
hoxc6bXP_005172831.1 Homeobox 140..192 CDD:278475 26/51 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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