DRSC/TRiP Functional Genomics Resources

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Protein Alignment inv and hoxc3a

DIOPT Version :9

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_001128157.2 Gene:hoxc3a / 30421 ZFINID:ZDB-GENE-980526-532 Length:263 Species:Danio rerio


Alignment Length:216 Identity:61/216 - (28%)
Similarity:85/216 - (39%) Gaps:45/216 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 NSNDSNSTATSSSTTNTSG-----APVDLVKSPPPAAGAGATGASGKSGEDSGTPIVWPAWVY-- 421
            ||:.....|..||:.|..|     ..:..|:.|             .|..|.|...:.||...  
Zfish    54 NSSTWKRHAEESSSENDKGNVWNFQNLSNVQHP-------------YSFSDDGNHSLDPANALER 105

  Fly   422 ---CTRYSDRPSSGRSPRARKPKKPA--TSSSAAGGGGGGVEKGEAADGGGVPEDKRPRTAFSGT 481
               |...:...|:.:.|..|:...|.  :|.:|...|......|||.....  ..||.|.||:.:
Zfish   106 EKACELSTSCLSTMKYPWMRETHAPTHFSSINAMESGDSKYSNGEAVVRNS--SSKRARVAFTSS 168

  Fly   482 QLARLKHEFNENRYLTEKRRQQLSGELGLNEAQIKIWFQNKRAKLKKSS-------------GTK 533
            ||..|:.||:.:.||...||.:::..|.|.:.||||||||:|.|.||..             ||:
Zfish   169 QLLELEKEFHFSAYLCRNRRLEMAELLKLTDRQIKIWFQNRRMKYKKDHKEKSTAKSSYTYLGTE 233

  Fly   534 N-PLALQLMAQGLYNHSTIPL 553
            | ||.:....    ..|.:||
Zfish   234 NQPLIISRST----TDSPVPL 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeobox 474..527 CDD:278475 24/52 (46%)
Engrail_1_C_sig 529..554 CDD:287495 8/39 (21%)
hoxc3aNP_001128157.2 Abdominal-A 123..246 CDD:332641 41/128 (32%)
Homeobox 162..214 CDD:306543 24/51 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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