DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inv and hoxc4a

DIOPT Version :9

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_571197.1 Gene:hoxc4a / 30345 ZFINID:ZDB-GENE-990415-112 Length:268 Species:Danio rerio


Alignment Length:167 Identity:53/167 - (31%)
Similarity:78/167 - (46%) Gaps:39/167 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   391 PPPAAGAGATGASGKSGEDSGTPIVWPAWVYCTRYSDRPSSGRSPRARKP------KK--PATSS 447
            |||...:.||.::..|..:..||             :.|:|..|  |::|      ||  .:|.:
Zfish    97 PPPLPLSPATPSAASSACNQATP-------------EHPNSSAS--AKQPVVYPWMKKIHVSTVN 146

  Fly   448 SAAGGGGGGVEKGEAADGGGVPEDKRPRTAFSGTQLARLKHEFNENRYLTEKRRQQLSGELGLNE 512
            |:..|.                |.||.|||::..|:..|:.||:.|||||.:||.:::..|.|:|
Zfish   147 SSYNGA----------------EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLVLSE 195

  Fly   513 AQIKIWFQNKRAKLKKSSGTKNPLALQLMAQGLYNHS 549
            .||||||||:|.|.||.....|.......:.|:.:.|
Zfish   196 RQIKIWFQNRRMKWKKDHRLPNTKVRSSSSTGISSGS 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeobox 474..527 CDD:278475 27/52 (52%)
Engrail_1_C_sig 529..554 CDD:287495 3/21 (14%)
hoxc4aNP_571197.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..129 11/46 (24%)
Antp-type hexapeptide 133..138 0/4 (0%)
Homeobox 157..210 CDD:278475 27/52 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..268 3/21 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.