DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment inv and rsc58

DIOPT Version :9

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_593010.1 Gene:rsc58 / 2541419 PomBaseID:SPAC1F3.07c Length:403 Species:Schizosaccharomyces pombe


Alignment Length:374 Identity:74/374 - (19%)
Similarity:104/374 - (27%) Gaps:153/374 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 EQLNIEDEEVEEEHDLDLEDPASCCSENSVLSVGQEQSEAAQAALSAQAQARQRLLISQIYRPSA 136
            ||..:..:|::.....|        :|||..|:..:          .|.|.|...|.........
pombe    88 EQSKVVGKEIKNGFTFD--------AENSTASLEND----------LQPQFRSHALFMVGSAGPL 134

  Fly   137 FSSTATT----VLPPSEGPPFSPEDLLQLPPSTGTFQEEFLRKSQLYAEELMKQQMHLMAAARVN 197
            |||||.|    ...|..|....|..||. .||....||..|.|                      
pombe   135 FSSTARTSRLDSRLPDGGIIAKPVALLP-TPSVANSQEYTLDK---------------------- 176

  Fly   198 ALTAAAAGKQLQMAMAAAAVATVPSGQDALAQL-TATALGLGPGGAVHPHQQ------------- 248
                      |.....|...|:|.....:||:| |...|..||..::.|::.             
pombe   177 ----------LSPPSTAKPPASVIEFNPSLAKLPTVKYLQSGPFSSIAPYKNSSSSVIPDSSFHS 231

  Fly   249 ----------------------------LLLQRDQ----------------VHHHHHMQNHLNNN 269
                                        .||:.|.                :.|...:||....:
pombe   232 VACYRASSHYKEAPVEKSIDIDIIQNNLSLLEEDSWTSVPIQGELVELNKLLQHLQLLQNQRITS 296

  Fly   270 ENL---HERALKFSIDNI---------------LKADFGSRLPKIGALSGNIGGGSVSGSSTGSS 316
            .|:   .||.:...:.|:               |..||...|.:.||.                 
pombe   297 HNVLSDEERQISVQVQNLILKLAKDYDMSPEDFLMDDFTLSLTQYGAF----------------- 344

  Fly   317 KNSGNTNGNRSPLKAPKKSGKPLNLAQSNAAANS-SLSFSSSLANICSN 364
             ..|....:..||:.|.:.   |..:|||||..| |||.:.||:...:|
pombe   345 -YRGTLPLSAQPLELPSQQ---LLRSQSNAALRSNSLSMNGSLSPSSTN 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeobox 474..527 CDD:278475
Engrail_1_C_sig 529..554 CDD:287495
rsc58NP_593010.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24341
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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