Protein Alignment inv and Hoxc4

DIOPT Version :10

• Sequence 1: NP_523699.3
• Gene: inv / 36239
• FlyBaseID: FBgn0001269
• Length: 576
• Species: Drosophila melanogaster
• Sequence 2: NP_001103354.1
• Gene: Hoxc4 / 24459
• RGDID: 1586210
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 193
• Identity: 58/193 - (30%)
• Similarity: 84/193 - (43%)
• Gaps: 51/193 - (26%)

  Fly   391 PPPAAGAGATGASGKSGEDSGTPIVWPAWVYCTRYS-DRPSSGRSPRARKP------KKPATSSS 448
            |.|.:||.|:.:              ||...|::.: |.|||..|   ::|      ||...|:.
  Rat   100 PAPLSGASASPS--------------PAPPACSQPAPDHPSSAAS---KQPIVYPWMKKIHVSTV 147

  Fly   449 AAGGGGGGVEKGEAADGGGVPEDKRPRTAFSGTQLARLKHEFNENRYLTEKRRQQLSGELGLNEA 513
            .....||              |.||.|||::..|:..|:.||:.|||||.:||.:::..|.|:|.
  Rat   148 NPNYNGG--------------EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSER 198

  Fly   514 QIKIWFQNKRAKLKKSSGTKN------------PLALQLMAQGL-YNHSTIPLTREEEELQEL 563
            ||||||||:|.|.||.....|            |..|.....|. .:||......|::..:::
  Rat   199 QIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDI 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
inv	NP_523699.3	Homeodomain	472..528	CDD:459649	29/55 (53%)
		Engrail_1_C_sig	529..554	CDD:431338	6/37 (16%)
Hoxc4	NP_001103354.1	Homeodomain	157..213	CDD:459649	29/55 (53%)