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Protein Alignment inv and Hoxc4
DIOPT Version :9
Sequence 1: | NP_523699.3 |
Gene: | inv / 36239 |
FlyBaseID: | FBgn0001269 |
Length: | 576 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001103354.1 |
Gene: | Hoxc4 / 24459 |
RGDID: | 1586210 |
Length: | 264 |
Species: | Rattus norvegicus |
Alignment Length: | 193 |
Identity: | 58/193 - (30%) |
Similarity: | 84/193 - (43%) |
Gaps: | 51/193 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 391 PPPAAGAGATGASGKSGEDSGTPIVWPAWVYCTRYS-DRPSSGRSPRARKP------KKPATSSS 448
|.|.:||.|:.: ||...|::.: |.|||..| ::| ||...|:.
Rat 100 PAPLSGASASPS--------------PAPPACSQPAPDHPSSAAS---KQPIVYPWMKKIHVSTV 147
Fly 449 AAGGGGGGVEKGEAADGGGVPEDKRPRTAFSGTQLARLKHEFNENRYLTEKRRQQLSGELGLNEA 513
.....|| |.||.|||::..|:..|:.||:.|||||.:||.:::..|.|:|.
Rat 148 NPNYNGG--------------EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSER 198
Fly 514 QIKIWFQNKRAKLKKSSGTKN------------PLALQLMAQGL-YNHSTIPLTREEEELQEL 563
||||||||:|.|.||.....| |..|.....|. .:||......|::..:::
Rat 199 QIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDI 261
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 1.000 |
|
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