DRSC/TRiP Functional Genomics Resources

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Protein Alignment inv and hoxd3

DIOPT Version :10

Sequence 1:NP_523699.3 Gene:inv / 36239 FlyBaseID:FBgn0001269 Length:576 Species:Drosophila melanogaster
Sequence 2:XP_002935734.1 Gene:hoxd3 / 100038058 XenbaseID:XB-GENE-478462 Length:415 Species:Xenopus tropicalis


Alignment Length:245 Identity:69/245 - (28%)
Similarity:99/245 - (40%) Gaps:39/245 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 SGNIGG---GSVSGSSTGSSKNSGNTNGNRSPLKAPKKSGKPLNLAQSNAAANSSLSFSSSLANI 361
            ||..||   ......|.|.|:.....:...|...:...|.:|..:...|..||       .::..
 Frog    26 SGLFGGYTYAKPESYSYGPSQQQYPQSSLDSDYPSTACSIQPAAIRAPNHKAN-------DISGS 83

  Fly   362 CSNSNDSNSTATSSSTTNTSGAPVDLVKSPP--PAAGAGATGASGKSGEDSG------TPIVWPA 418
            |..:..|.::..:.|.:|.......|   ||  |:.|..:.....||...||      :..::| 
 Frog    84 CMRTTSSQNSNQAPSISNQQHQAPSL---PPSSPSHGNSSAQKKSKSSNSSGSSQATLSKQIFP- 144

  Fly   419 WVYCTRYSDRPSSGRSPRARKPKKPATSSSAAGGGGGGVEKGEAADGGGVPEDKRPRTAFSGTQL 483
            |:            :..|....:|..:|||:...|....||....     |..||.|||::..||
 Frog   145 WM------------KESRQNAKQKNTSSSSSTPPGENCEEKSPTG-----PSSKRVRTAYTSAQL 192

  Fly   484 ARLKHEFNENRYLTEKRRQQLSGELGLNEAQIKIWFQNKRAKLKKSSGTK 533
            ..|:.||:.||||...||.:::..|.|.|.||||||||:|.|.||....|
 Frog   193 VELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
invNP_523699.3 Homeodomain 472..528 CDD:459649 29/55 (53%)
Engrail_1_C_sig 529..554 CDD:431338 1/5 (20%)
hoxd3XP_002935734.1 Homeodomain 181..237 CDD:459649 29/55 (53%)
DUF4074 352..413 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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