DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E(Pc) and Epc1

DIOPT Version :9

Sequence 1:NP_001260897.1 Gene:E(Pc) / 36238 FlyBaseID:FBgn0000581 Length:2097 Species:Drosophila melanogaster
Sequence 2:XP_038951208.1 Gene:Epc1 / 100362678 RGDID:2324280 Length:816 Species:Rattus norvegicus


Alignment Length:976 Identity:316/976 - (32%)
Similarity:465/976 - (47%) Gaps:260/976 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKLSFRARHLDPSKQMPIYLAEELPDLPEYSAINRAVPQMPSGMEKEEESEHHLQRAICT---- 61
            |||||||||.||.||.:|::..|:||||.||::|||||||||:||||||||||||||||..    
  Rat     1 MSKLSFRARALDASKPLPVFRCEDLPDLHEYASINRAVPQMPTGMEKEEESEHHLQRAISAQQVY 65

  Fly    62 -----GLIIPTPEVLQTDQPFYDAYYPPDYKMPRQMIHMQPLGLDTEVPDYDMDSADEDWLSQ-Q 120
                 .::||.||. :::..:|::.||.::|||:|:||:||..||.|.||||:||.||.:::: :
  Rat    66 GEKRDNMVIPVPEA-ESNIAYYESIYPGEFKMPKQLIHIQPFSLDAEQPDYDLDSEDEVFVNKLK 129

  Fly   121 QRLELTELKFEQMMDRLEKSSGQTV----VTLNEAKSLLNQDDETSISVYDYWLNKRLKMQHP-L 180
            :::::..::||:|:|||||.|||.|    |:|.|||.||.:|||....||:||:.||...:.| |
  Rat   130 KKMDICPVQFEEMIDRLEKGSGQQVQLHPVSLQEAKLLLKEDDELIREVYEYWIKKRKTCRGPSL 194

  Fly   181 ILTVKTESRPGASSNNPYLAFRRRTEKMQTRKNRKNDEASYEKMLKLRRDLQRATTILEMVRRRE 245
            |.:||.|.|.|:|:|:||:||||||||||||||||||||||||||||||||.||.|||||::|||
  Rat   195 IPSVKQEKRDGSSTNDPYVAFRRRTEKMQTRKNRKNDEASYEKMLKLRRDLSRAVTILEMIKRRE 259

  Fly   246 ETKRDHLKMTVNIFEKRVEMRDFNGAVYSELNSQYKNTRPAYNPLYTNQYSQGAAAVGTAGAILA 310
            ::||:.|.:|:.|.|||..:.|::|.:.||:.:|.:..:|.|                       
  Rat   260 KSKRELLHLTLEIMEKRYNLGDYSGEIMSEVMAQRQPVKPTY----------------------- 301

  Fly   311 ALPTGLLPGGAGAAGNANVFGSASQYLNSSNLTMDAISGSGNGNSSRKEKRPYKKRKHKLPRDKQ 375
            |:|  ::|                 ..|||......::.:       ||.:..|:.|..|.|.|:
  Rat   302 AIP--IIP-----------------ITNSSQFKHQDVTDA-------KEFKVNKQDKADLIRPKR 340

  Fly   376 QHQQQQTQQHQQQQYLPASGGAGVSPAHHLPHHLHHLSRQQSASPAA--NDSIADSEEEDYFGAG 438
            :::       ::.:.||:|..|                 .|..||||  ..|..|..:.|:..:.
  Rat   341 KYE-------KKPKVLPSSAAA-----------------PQQPSPAALPGFSAKDLNQYDFPSSD 381

  Fly   439 AQNGNKL---GSESEEET----PFAFRRRSSC-VYLPTRQRDGRYPWDSADEDMAPSGACSDAKY 495
            .:..:::   .||:|||.    ||||||::.| .|.|...:.|.:||.|..:     |...|.:|
  Rat   382 EEPLSQVLSGSSEAEEENDPDGPFAFRRKAGCQYYAPHLDQTGNWPWTSPKD-----GGLGDVRY 441

  Fly   496 RYTLTSLNYPRPRCIGFARRRLGRGGRILLDRATTNFDDFWSQLDYTVMES---VTVNKCRDKIK 557
            ||.||:|..|: ||:||||||:|||||:|||||.:::|..:..||..::.|   ..||:..:..:
  Rat   442 RYCLTTLTVPQ-RCLGFARRRVGRGGRVLLDRAHSDYDSMFHHLDLDMLSSPQPSPVNQFANTSE 505

  Fly   558 QRDPDQLCKPSS---PPTVVDLVPAGKPVDGEH---PVPELIKEEPSSDTEKPVAATESGRESKE 616
            ....|   :|||   ...:||:    |.....|   ..|.|    |.||         || |...
  Rat   506 TNTSD---RPSSKDLSQILVDI----KSCRWRHFRPRTPSL----PDSD---------SG-ELSS 549

  Fly   617 RELEEKFENDVDDEFVASDDENVSRLGIYSSAVTLPQSCADLRQKRRRLRRKKQQLRELNAAKRL 681
            |:|.                .::||.|   .|.....:|:...|.|..                 
  Rat   550 RKLH----------------RSISRAG---PAQPGAHTCSASTQSRSS----------------- 578

  Fly   682 KRSSEAVATAEDVQLEDEDTKPDLRPLPRAYLQRLALILGQKL-KVEEDDNTEVSENVAPELLEM 745
            ..|:....|||..|               .:.|:|||:..|:| :.::......|...||:    
  Rat   579 SGSTHCAFTAEQYQ---------------QHQQQLALMQQQQLAQTQQQQANSSSSTAAPQ---- 624

  Fly   746 NDPEQLQPPRANHQQHHRSNHNNNNNTVLNNNNSSSSNVMNKDVSISEKINVIKQEAEELVG--- 807
                                     ..|....:|:|:......:..||::...|.:.:.::|   
  Rat   625 -------------------------GFVSKTLDSASAQFAASALMTSEQLMGFKMKDDVVLGIGV 664

  Fly   808 -------GKCEDQPVASTSAAAAAARAAEAAAA---------------------AEAASSTTT-- 842
                   |..:...::||:..|....:...|.:                     ..||:|.||  
  Rat   665 NGVLPASGVYKGLHLSSTTPTALVHTSPSTAGSTLLQPSNITQTSGSHSALSHQVTAANSATTQV 729

  Fly   843 -------LAAPNPGPSLEEVAKTIKREMIDADDSNEPLSSIRTAAVMLSTQTSVSELMDDEAEDD 900
                   |..|:..|::..:| .|....|....|..|.|:::.||   :....||::....:.|.
  Rat   730 LFGNNIRLTVPSSVPTVNSIA-PINARHIPRTLSAVPPSALKLAA---AANCQVSKVPSSSSVDS 790

  Fly   901 V 901
            |
  Rat   791 V 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(Pc)NP_001260897.1 EPL1 7..139 CDD:287484 72/141 (51%)
Epc1XP_038951208.1 EPL1 7..148 CDD:402235 72/141 (51%)
E_Pc_C 615..816 CDD:399616 35/210 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350709
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2261
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001287
OrthoInspector 1 1.000 - - otm45731
orthoMCL 1 0.900 - - OOG6_102490
Panther 1 1.100 - - LDO PTHR14898
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1679
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.790

Return to query results.
Submit another query.