DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and AT1G43245

DIOPT Version :10

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_001322450.1 Gene:AT1G43245 / 840925 AraportID:AT1G43245 Length:573 Species:Arabidopsis thaliana


Alignment Length:427 Identity:84/427 - (19%)
Similarity:151/427 - (35%) Gaps:155/427 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 RASADVKPGEELLVE-RPFVSVLLEKFAKTHCENCFMRTVVPVACPRCADVLYCSEQCR-EEASK 316
            ||:.|::...:|... .|..|.|.:.|..:||.:||  :::|.:.|:   .||||..|. .::..
plant     4 RAAEDIEIRTDLFPPLSPLASSLYDSFLSSHCSSCF--SLLPPSPPQ---PLYCSAACSLTDSFT 63

  Fly   317 KYHKYECGIVPIIWRSGASINNHIALRIIASKPLDYFLKL----KPTIDEELTPEQLISLPKDDF 377
            ...::...|.||:                   |.|....|    ...:|...:|.:|.:|     
plant    64 NSPQFPPEITPIL-------------------PSDIRTSLHLLNSTAVDTSSSPHRLNNL----- 104

  Fly   378 RRVAQLERHQGERQPSNFFQHVLM------------ARFLTNCLRAGGYFGSEPKPDEV--SIIC 428
                 |..|           |:||            |.|:...:|      |..|..|:  :.||
plant   105 -----LTNH-----------HLLMADPSISVAIHHAANFIATVIR------SNRKNTELEEAAIC 147

  Fly   429 SLVLRSLQFIQFNTHEVAELHKFSSSGREKSIFIGGAIY-PTLALFNHSCDPGVVRYF------- 485
            :::..::           |:|  .|:|    :.:|.|:| .:.:..||||.|.....|       
plant   148 AVLTNAV-----------EVH--DSNG----LALGIALYNSSFSWINHSCSPNSCYRFVNNRTSY 195

  Fly   486 ------------------------------RGTTIHINSVRPIEAGLPINENYGPMYTQDERSER 520
                                          .|..:.:.|::.|::|..|..:|..:.  .....|
plant   196 HDVHVTNTETSSNLELQEQVCGTSLNSGNGNGPKLIVRSIKRIKSGEEITVSYIDLL--QPTGLR 258

  Fly   521 QARLKDLYWFECSCDACIDNWPKF-DDLPRDVIRFRCD---------APNNCSAVIEVPPSCNDF 575
            |:.|...|.|.|:|..|..:.|.: |.:...|:....:         :.|...||.::    ||:
plant   259 QSDLWSKYRFMCNCGRCAASPPAYVDSILEGVLTLESEKTTVGHFDGSTNKDEAVGKM----NDY 319

  Fly   576 MVKCV-----------TCGE-ITNIL-KGLKVMQDTE 599
            :.:.:           ||.| |.::| .|::..:|::
plant   320 IQEAIDDFLSDNIDPKTCCEMIESVLHHGIQFKEDSQ 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
SET_SMYD4 235..537 CDD:380934 68/340 (20%)
zf-MYND 284..323 CDD:460312 10/39 (26%)
AT1G43245NP_001322450.1 SET_SMYD <141..275 CDD:380997 28/152 (18%)
Blue background indicates that the domain is not in the aligned region.

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