DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and smyd2a

DIOPT Version :9

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_001013568.1 Gene:smyd2a / 541423 ZFINID:ZDB-GENE-050320-126 Length:435 Species:Danio rerio


Alignment Length:453 Identity:101/453 - (22%)
Similarity:165/453 - (36%) Gaps:102/453 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 FVSPLVRIDSNRQEGRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRC 300
            |:||        .:||..:|....|.|:.:.....:..||........||.||.|......|.:|
Zfish    12 FLSP--------GKGRGLKAIKHFKVGDLVFACPAYAYVLTVNERGGRCECCFTRKEGLSKCGKC 68

  Fly   301 ADVLYCSEQCREEASKKYHKYECGIVPIIWRSGASINNHIALRIIASKPLDYFLKLKPTIDEELT 365
            ....||:.:| :......||.||..:                               ....|...
Zfish    69 KQAYYCNVEC-QRGDWPMHKLECSAM-------------------------------CAYGENWC 101

  Fly   366 PEQLISLPKDDFRRVAQLERHQGERQPSNFFQHVLMARFLTNCLRAGGYFGSEPKPDEVSIICSL 430
            |.:.:.|    ..|:...::||.||.||   :.||..|.|...|.......:|....:::.:...
Zfish   102 PSETVRL----VARIILKQKHQTERTPS---ERVLTLRELEAHLDKLDNEKNEMNDTDIAALHHF 159

  Fly   431 VLRSLQFIQFN---THEVAEL--HKFSSSGREKSIFIGGAIYPTLALFNHSCDPGVVRYFRGTTI 490
            ..|.|.|.. |   |..:|::  :.|:....|.| .:|.|::|.:||.||||.|.|:..::||..
Zfish   160 YSRHLDFPD-NAALTELIAQVNCNGFTIEDEELS-HLGSALFPDVALMNHSCSPNVIVTYKGTVA 222

  Fly   491 HINSVRPIEAGLPINENY-GPMYTQDERSERQARLKDLYWFECSCDACIDNWPKFDDLPRDVIRF 554
            .:.:|:.|.....|..:| ..:|..::|.|   ||||.|:|.|.|..|..   |..|..:..||.
Zfish   223 EVRAVQEINPEEEIFNSYIDLLYPTEDRIE---RLKDSYFFNCDCKECTS---KSKDEAKMEIRQ 281

  Fly   555 RCDAPNNCSAVIEVPPSCNDFMVKCVTCGEITNILKGLK-------VMQDTEM-MTRTAKRLYET 611
            :          :.:||...:.....:....:....:..|       :::..|: |.:......||
Zfish   282 K----------LSIPPEEEEIKQMVIYARNVIEEFRRAKHYKTPSELLEICELSMEKMGAIFAET 336

  Fly   612 GEYP-----KALA------------KFVDLIRIMYEVLAPPFPDFCESQQHLKDCFLNLGNVY 657
            ..|.     :|:.            |:.:.|...|.|..||:      ..::...:|.||.:|
Zfish   337 NVYMLHMMYQAMGVCLYMQDWDGAMKYGEKIIHPYSVHYPPY------SLNVASMYLKLGRLY 393

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR_11 74..143 CDD:290150
TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
zf-MYND 284..323 CDD:280009 12/38 (32%)
smyd2aNP_001013568.1 S-adenosyl-L-methionine binding. /evidence=ECO:0000250 17..19 0/1 (0%)
zf-MYND 52..90 CDD:280009 12/38 (32%)
Peptide substrate binding. /evidence=ECO:0000250 183..185 0/1 (0%)
SET <204..240 CDD:279228 12/35 (34%)