DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and SmydA-6

DIOPT Version :9

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_611182.1 Gene:SmydA-6 / 36917 FlyBaseID:FBgn0034183 Length:498 Species:Drosophila melanogaster


Alignment Length:338 Identity:81/338 - (23%)
Similarity:125/338 - (36%) Gaps:74/338 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 IDSNRQEGRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRCADVLYCS 307
            |..|...||||.|..:|:.||.||:|.|.  |:|....:..|..||  .:....|.:|..:..| 
  Fly    14 IKQNDTLGRFAVALCNVRAGETLLLENPI--VVLPLMGERRCSKCF--NLTESFCRKCRLLALC- 73

  Fly   308 EQCREEASKKYHKYECGIVPIIWRSGASINNHIALRIIASKPLDYFLKLKPTIDEELTP------ 366
            |.|.:     :.:.:|              ..:|....:...::...|.:.|   |:.|      
  Fly    74 EDCSD-----HDERDC--------------KRLAEMNFSDDQVELLQKKEHT---EIQPVLKCLL 116

  Fly   367 ----EQLISLPKDDFRRVAQLERHQGERQPSNFFQHVLMARFLTNCLRAGGYFGS-EPKPDEVSI 426
                |:.:.|.::..:..:||...:|.....|:.:|....      |..||.... ....||   
  Fly   117 LREHEETLPLYEEMSQMDSQLMTRRGTEVWKNYQEHAFTP------LDYGGVLAQLRGAADE--- 172

  Fly   427 ICSLVLRSLQFIQFNTHEVAELHKFSSSGREKSIFIGGA---IYPTLALFNHSCDPG-VVRYFRG 487
              .||...|..:..|.:|:            ::..:|||   :|....||.|||.|. |:.....
  Fly   173 --DLVQGLLGILDINAYEI------------RAPEVGGAMRGLYRRAGLFAHSCTPNLVISIDDE 223

  Fly   488 TTIHINSVRPIEAGLPINENYGPMYTQDERSERQARLKDLYWFECSCDACIDNWPKFDDLPRDVI 552
            ..|.:.:.|.|.||..:...|..:....|  ||:..||....|:|||..|.|.    .:|...:.
  Fly   224 QRIKVYANRFIAAGEILYNCYTNVLLGTE--ERRKILKVGKCFDCSCPRCQDP----TELGTHMS 282

  Fly   553 RFRCDAPNNCSAV 565
            .|.|   :.||.|
  Fly   283 SFIC---SQCSCV 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR_11 74..143 CDD:290150
TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
zf-MYND 284..323 CDD:280009 8/38 (21%)
SmydA-6NP_611182.1 SET <179..244 CDD:279228 19/76 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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