DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and dao

DIOPT Version :9

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_001260462.1 Gene:dao / 34891 FlyBaseID:FBgn0028862 Length:882 Species:Drosophila melanogaster


Alignment Length:664 Identity:143/664 - (21%)
Similarity:254/664 - (38%) Gaps:163/664 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 KNASLAAEIKERATSAFKAKKW-LEAMMLYTRSYVALPSENVAEIRVVLANRSATLY----HMQK 128
            |:...:..::|....:::.::. |:|..|:|.:....|:.|.....:..||||..|:    :.:.
  Fly   161 KSEEESRRLREAGNDSYRKERHPLKASDLFTEAIFLAPARNTLAAALAHANRSLVLFDCGLYAES 225

  Fly   129 YQECLIDIKRALDLSYSKDLIYKLYERQARCYMALKDYPHTIDSFKKCITAMDDSTLASDKRAKL 193
            |.:||.    ||||.|.::.:..:..|||.|.:.|:       :|..|               :.
  Fly   226 YDDCLC----ALDLGYPEEYLPLIKLRQAACALKLR-------NFALC---------------EE 264

  Fly   194 NLDAMTMIKMLQ-NDPRTAK-----QEAKQQKQKIALDQAKPVKLENEFVSPLVRIDSNRQEGRF 252
            :|..:..|::.| .:.||.:     :..|.::.::|:.....:.:.:.....:..:| |......
  Fly   265 HLHELLHIELNQVFEARTHELWHQCEVLKVERFEMAVQTGDDLDINDSKAFEIAWLD-NSSSLHT 328

  Fly   253 ARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRCAD--VLYCSEQCREEAS 315
            .||.|.    ..|:.|...|:::.....:. |:.|.:...:|..|..|::  |:|||.|||.:.:
  Fly   329 TRAVAK----NALIFESEAVAMVPSGNCRV-CDYCGITQFIPFPCIYCSNRLVVYCSRQCRFKHA 388

  Fly   316 KKYHKYEC-GIVPIIWRSGASINN-----HIALRIIAS-----------KPLDYFLKLKPTIDEE 363
             ..|..|| |....::.|...:..     .:|.|::.:           ||.  ..||...|:..
  Fly   389 -AIHAVECFGHQIELFESFGEVFGMPRLLQLAFRMLITGLPELLGHCRKKPT--LSKLWSAINGG 450

  Fly   364 LTPEQLISLPKDDFRRVAQLERHQGERQPSNFFQHVLMAR----FLTNCLRAGGYF--------- 415
            |...|.|:     :..|.:|||.:.||.........|.|.    :|:.|..   :|         
  Fly   451 LQERQDIA-----YSAVLRLERLKEERPTDTVIALALAAHILSIYLSKCTT---FFDQLEKSLPT 507

  Fly   416 GSEPKPDEVSIICSLVL---------RSLQ-----FIQFNTHEVAELHKFS--------SSGR-- 456
            .|.....|..::|:.:|         |||.     .:..:.|..:.|::|.        ..|.  
  Fly   508 ASRMSSAEWELLCAALLMRHIGQLRHRSLTACRSFVLPADPHVFSPLNEFQLWAAPMRLQEGHLH 572

  Fly   457 ----EKSIFIGGAIYP-TLALFNHSCDPGVVRYFRGTTIHINSVRPIEAGLPINENY-GPMYTQD 515
                |.:: :..::|| ||.|..|||...:...|.|.|:...::..:.||..|...: |..:.|.
  Fly   573 LLAGEVAV-VSYSVYPDTLNLCRHSCSSTICAKFSGRTVTALALLDLPAGSGIYNCFAGGNFQQL 636

  Fly   516 ERSERQARLKDLYWFECSCDAC-----IDNWPKFDDLPRDVIRFRCDAPNNC------SAVIEVP 569
            .|.||..:|.: ....|.|:||     .|.:.||.       |:|||.| ||      :|:...|
  Fly   637 PREERTKQLLE-SGIRCHCNACQLTHSDDQFHKFH-------RYRCDNP-NCMEIFTPNALPHAP 692

  Fly   570 ------------PSCNDF-MVKCVTCGE---------ITNILKGLKVMQDT----EMMTRTAKRL 608
                        |..|.. ::.|..|||         .|..|...:::::.    ..:.|...:|
  Fly   693 SLRWWLSEEYTQPEFNGADLIMCPHCGEYQKLEWFWAFTTSLIDCELIEERCKLYAAIERAENQL 757

  Fly   609 YETGEYPKALAKFV 622
            .:..|...|||:.:
  Fly   758 MDLHECKVALARLL 771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR_11 74..143 CDD:290150 18/73 (25%)
TPR repeat 74..103 CDD:276809 5/29 (17%)
TPR repeat 108..142 CDD:276809 11/37 (30%)
TPR repeat 150..177 CDD:276809 6/26 (23%)
zf-MYND 284..323 CDD:280009 13/40 (33%)
daoNP_001260462.1 TPR_11 165..235 CDD:290150 17/73 (23%)
TPR repeat 200..235 CDD:276809 11/38 (29%)
TPR repeat 243..270 CDD:276809 8/48 (17%)
zf-MYND 355..395 CDD:280009 13/40 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1278034at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR46165
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.920

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