DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and smyd1a

DIOPT Version :10

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_991103.2 Gene:smyd1a / 321245 ZFINID:ZDB-GENE-030131-9825 Length:485 Species:Danio rerio


Alignment Length:435 Identity:91/435 - (20%)
Similarity:153/435 - (35%) Gaps:135/435 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 EGRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRCADVLYCSEQCREE 313
            :||..|.:.|:..||.:..|..|.:|:|:..:...|.:||.|.|.|..|.:|....||...| :.
Zfish    17 KGRGLRGTRDLSAGEVVFAEASFAAVVLDSLSLQVCHSCFRRQVNPHRCAQCKFAHYCDRTC-QR 80

  Fly   314 ASKKYHKYECG---------------IVPIIWRSGASINNHIALRIIASKPLDYFLKLKPTID-- 361
            |:...|:.||.               :..|:||    |..|..|  ::...|       .|:|  
Zfish    81 AAWDEHRKECSAIRNIGKAPNENVRLVARILWR----IQKHTGL--VSDSQL-------TTLDML 132

  Fly   362 ----EELTPEQLISLPKDDFRRVAQLERHQGERQPSNFFQHVLMARFLTNCLRAGGYFGSEPK-- 420
                ..:|||.|..|..|                         :..|.|       |:..:.|  
Zfish   133 EDHLSRMTPEDLKELKVD-------------------------VKTFYT-------YWPKKSKAV 165

  Fly   421 -PDEVSIICSLVLRSLQFIQFNTHEVAELHKFSSSGREKSIFIGGAIYPTLALFNHSCDPGV--- 481
             .|.||.:..::               ..:.|:.|.:.....:|..::|.|.|.||.|.|..   
Zfish   166 GEDYVSHLFGVI---------------SCNGFTLSDQRGLQSVGIGLFPNLCLVNHDCWPNCTVI 215

  Fly   482 ----------VRYFRGTTIHINSVRPIEAGLPINENYGPMYTQDERSERQARLKDLYWFECSCDA 536
                      ..:.....|.:.::.||.||..:..:|....:..  ::||..|:..|:|:|.|:.
Zfish   216 LNHGDQSALDASFHSSRRIELRALEPISAGQELTVSYVDFLSVS--TDRQRLLQQQYYFDCKCEH 278

  Fly   537 CIDNWPKFDDLPRDVIRFRCDAPNNCSAVIEVPPSCNDFMVKCVTCGEITNILKGLKVMQDTEMM 601
            |: |..| |:| ...::...|.....:.|::   ...||.::.:           :|:       
Zfish   279 CV-NGTK-DEL-MTAVKPTEDGKQPSAEVVK---QLTDFSLQAL-----------VKI------- 319

  Fly   602 TRTAKRLYETGEYPKALAKFVDLIRIMYEVLAPPFPDFCESQQHL 646
                       |..:|...|.::|||..|.|....|.|.::..|:
Zfish   320 -----------EAARAQGNFHEVIRICRECLEKQDPVFADTNVHV 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
SET_SMYD4 235..537 CDD:380934 70/324 (22%)
zf-MYND 284..323 CDD:460312 13/38 (34%)
smyd1aNP_991103.2 SET 9..279 CDD:394802 70/324 (22%)
zf-MYND 52..90 CDD:460312 13/38 (34%)
FxSxx_TPR <321..435 CDD:468560 10/33 (30%)
Blue background indicates that the domain is not in the aligned region.

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