DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and Smyd2

DIOPT Version :10

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_996733.1 Gene:Smyd2 / 289372 RGDID:727785 Length:433 Species:Rattus norvegicus


Alignment Length:471 Identity:110/471 - (23%)
Similarity:183/471 - (38%) Gaps:128/471 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 EGRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRCADVLYCSEQCREE 313
            :||..||......|:.|.....:..||.......|||.||.|......|.||....||..:|::|
  Rat    17 KGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKE 81

  Fly   314 ASKKYHKYECGIVPII---WRSGASINNHIALRIIASKPLDYFLKLKPTIDEELTP-EQLISLPK 374
             ....||.||..:.:.   |....::  .:..||:|.:      |:.|    |.|| |:|::   
  Rat    82 -DWPLHKLECSSMVVFGENWNPSETV--RLTARILAKQ------KMHP----ERTPSEKLLA--- 130

  Fly   375 DDFRRVAQLERH--QGERQPSNFFQHVLMA--RFLTNCLRAGGYFGSEPKPDEVSIICSLVLRSL 435
                 |.:.|.|  :.:.:..:..|..:.|  :|.:..|..         ||..|::       :
  Rat   131 -----VREFESHLDKLDNEKKDLIQSDIAALHQFYSKHLEF---------PDHSSLV-------V 174

  Fly   436 QFIQFNTHEVAELHKFSSSGREKSIFIGGAIYPTLALFNHSCDPGVVRYFRGTTIHINSVRPIEA 500
            .|.|.|      .:.|:....|.| .:|.||:|.:||.||||.|.|:..::||...:.:|:.|..
  Rat   175 LFAQVN------CNGFTIEDEELS-HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHP 232

  Fly   501 GLPINENY-GPMYTQDERSERQARLKDLYWFECSCDAC--------------IDNWPKFDDLPRD 550
            |..:..:| ..:|..::|::   ||:|.|:|.|.|..|              :.|.|:.:.: ||
  Rat   233 GDEVFTSYIDLLYPTEDRND---RLRDSYFFTCECRECTTKDKDKAKVEIRKLSNPPQAEAI-RD 293

  Fly   551 VIRFR----------------------CD-APNNCSAVIEVPPSCNDFMVK--------CVTCGE 584
            ::|:.                      |: :....|:|.|   ..|.:|:.        |:...:
  Rat   294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE---DSNVYMLHMMYQAMGVCLYMQD 355

  Fly   585 ITNILK-GLKVMQ-----------DTEMMTRTAKRLY------ETGEYPKALAKFVDLIRIMYEV 631
            ....|| |.|:::           :...|.....|||      ..||  |||.|.:.::.|.:  
  Rat   356 WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGE--KALKKAIAIMEIAH-- 416

  Fly   632 LAPPFPDFCESQQHLK 647
             ....|...|.:|.::
  Rat   417 -GKDHPYISEIKQEIE 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
SET_SMYD4 235..537 CDD:380934 79/296 (27%)
zf-MYND 284..323 CDD:460312 14/38 (37%)
Smyd2NP_996733.1 SET_SMYD2 7..269 CDD:380979 80/298 (27%)
zf-MYND 52..90 CDD:460312 14/38 (37%)
TPR_10 388..422 CDD:463861 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.

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