DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and Smyd4

DIOPT Version :9

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_001099280.1 Gene:Smyd4 / 287525 RGDID:1307369 Length:801 Species:Rattus norvegicus


Alignment Length:667 Identity:152/667 - (22%)
Similarity:269/667 - (40%) Gaps:116/667 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 KERATSAFKAKKWLEAMMLYTRSYVALPSENVAEIRVVLANRSATLYHMQKYQECLIDIKRALDL 142
            :|.....|:.|:::.|.:||::. |:....|..:|.:..|||||.|:|:.:::.||.||.||...
  Rat    72 REEGNKRFQEKEYMGAAVLYSKG-VSHSRPNTEDISLCYANRSAALFHLGQHEACLKDIVRAGMH 135

  Fly   143 SYSKDLIYKLYERQARCYM---ALKDYPHTIDSFKKCITAMDDSTLASDKRAKLNLDAMTM-IKM 203
            .|.:.|..||..|:..|.:   .|::...||...:..:|.......:|.:..:.|:..:.| |:.
  Rat   136 GYPERLQPKLMIRKTECLVNLGRLQEARQTISDLENSLTTKPTLMPSSHQILQRNVQQLKMKIQE 200

  Fly   204 LQNDPRTAKQEAKQQKQKIALDQAKPVKLENEFVSPL---VRIDSNRQEGRFARASADVKPGEEL 265
            .:..|.:......:..:.:||.:      ||:.:|..   |.:.::..:||...|:.|:.|||.|
  Rat   201 KETLPESFPAALTKALEDMALGE------ENKQISGASLSVSLCTDPLKGRHLVATKDILPGELL 259

  Fly   266 LVERPFVSVL-----------LEK-------FAKTHCENCFMRTVVPVACPRCADVLYCSEQCRE 312
            :.|..|||||           ||.       .|..:|..|...|:..|.|..|:...|||::|.:
  Rat   260 VKEDAFVSVLNPGEMPPLRHCLENKWDTRVTSADLYCHRCLRHTLATVPCGGCSYAKYCSQECVQ 324

  Fly   313 EASKKYHKYECGIVPIIWRSGASINNHIALR---IIASKPLDYFLKL---KPTIDEELTPE--QL 369
            :|...||..||.:..::...|  :..|:|||   :...:.:|..:::   |....:...||  .|
  Rat   325 QAWDHYHSTECSLGGLLLTLG--VFCHVALRMTLLARFEDVDRVIRMICDKTGRKDTCLPESKDL 387

  Fly   370 I--------------------SLP--------KDDFRRVAQLERHQGERQPSNFFQHVLMARFLT 406
            :                    |:|        ::::..|..|..|..:..|.:.|...:....|.
  Rat   388 VKTFGYTNQGESEENSETCEPSIPGCNVNGKYENNYDAVLSLLPHTEKHSPEHKFICAVSVSALC 452

  Fly   407 NCLRAGGYFG-----SEPKPDEVSI-ICS-------LVLRSLQFIQFNTHEVAEL----HKFSSS 454
            ..|:|.....     ..|:...|:. :|:       .:|:.:..:|.|...:..:    .|.|..
  Rat   453 RQLKATSLQAQTTGLKSPRLKAVTPGLCTDLTVWGVAMLQHMLQLQCNAQAITSICYAGSKESII 517

  Fly   455 GREKSIFIGGAIYPTLALFNHSCDPGVVRYFRGTTIHINSVRPIEAGLPINENYGPMYTQDERSE 519
            ...:.:.:...::|.::|.||||.|.....|..|...|.:.:.|..|..|...|||..::...:|
  Rat   518 TNSRQVRLATGVFPVVSLLNHSCSPNTSVSFTSTVATIRAAQQIAKGQEILHCYGPHESRMGVAE 582

  Fly   520 RQARLKDLYWFECSCDAC---------IDNWPKFDDLPRDVIRFRCDAPNNCSAVIEVPPSCNDF 575
            ||.||...|:|:|||.||         ...|..|                 |.....||...|| 
  Rat   583 RQQRLSSQYFFDCSCPACHAETLRAAVAPRWEAF-----------------CCNTCRVPMQGND- 629

  Fly   576 MVKC--VTCGEITNILKGLKVMQDTEMMTRTAKRLYETGEYPKALAKFVDLIRIMYEVLAPPFPD 638
            ::.|  .:|....:..:.:..:||.:....||::|..:....:|:.:.::..|.....|:.....
  Rat   630 VLSCSNESCTNSVSRDRLVSRLQDLQQQVHTAQKLLRSDRPEQAIQQLLECQRAAENFLSAEHTV 694

  Fly   639 FCESQQHLKDCFLNLGN 655
            ..|.:..|...:..||:
  Rat   695 LGEIEDGLAQAYATLGD 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR_11 74..143 CDD:290150 22/64 (34%)
TPR repeat 74..103 CDD:276809 6/24 (25%)
TPR repeat 108..142 CDD:276809 15/33 (45%)
TPR repeat 150..177 CDD:276809 7/29 (24%)
zf-MYND 284..323 CDD:280009 13/38 (34%)
Smyd4NP_001099280.1 TPR_11 68..132 CDD:290150 20/60 (33%)
TPR repeat 68..96 CDD:276809 6/24 (25%)
TPR repeat 101..136 CDD:276809 15/34 (44%)
zf-MYND 296..335 CDD:280009 13/38 (34%)
SET <526..572 CDD:279228 13/45 (29%)
TPR_12 692..>748 CDD:290160 4/20 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H35098
Inparanoid 1 1.050 135 1.000 Inparanoid score I4473
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1278034at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45792
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.830

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