DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-3 and Smyd2

DIOPT Version :10

Sequence 1:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster
Sequence 2:NP_081072.1 Gene:Smyd2 / 226830 MGIID:1915889 Length:433 Species:Mus musculus


Alignment Length:423 Identity:97/423 - (22%)
Similarity:163/423 - (38%) Gaps:111/423 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 EGRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVACPRCADVLYCSEQCREE 313
            :||..||......|:.|.....:..||.......|||.||.|......|.||....||..:|::|
Mouse    17 KGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKE 81

  Fly   314 ASKKYHKYECGIVPII---WRSGASINNHIALRIIASKPLDYFLKLKPTIDEELTP-EQLISLPK 374
             ....||.||..:.::   |....::  .:..||:|          |..|..|.|| |:|::   
Mouse    82 -DWPLHKLECSSMVVLGENWNPSETV--RLTARILA----------KQKIHPERTPSEKLLA--- 130

  Fly   375 DDFRRVAQLERH--QGERQPSNFFQHVLMA--RFLTNCLRAGGYFGSEPKPDEVSIICSLVLRSL 435
                 |.:.|.|  :.:.:..:..|..:.|  :|.:..|..         ||..|::       :
Mouse   131 -----VREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEF---------PDHSSLV-------V 174

  Fly   436 QFIQFNTHEVAELHKFSSSGREKSIFIGGAIYPTLALFNHSCDPGVVRYFRGTTIHINSVRPIEA 500
            .|.|.|      .:.|:....|.| .:|.||:|.:||.||||.|.|:..::||...:.:|:.|..
Mouse   175 LFAQVN------CNGFTIEDEELS-HLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHP 232

  Fly   501 GLPINENY-GPMYTQDERSERQARLKDLYWFECSCDACIDNWPKFDDLPRDVIRFRCDAPNNCSA 564
            |..:..:| ..:|..::|::   ||:|.|:|.|.|..|.   .|..|..:..:| :..:|....|
Mouse   233 GDEVFTSYIDLLYPTEDRND---RLRDSYFFTCECRECT---TKDKDKAKVEVR-KLSSPPQAEA 290

  Fly   565 VIEVPPSCNDFMVKCVTCGEITNILKGLKVMQDTEMMTRTAKRLYE---TGEYPKALAKFVDLIR 626
            :.:                                 |.|.|:.:.|   ..::.|:.::.:::..
Mouse   291 IRD---------------------------------MVRYARNVIEEFRRAKHYKSPSELLEICE 322

  Fly   627 IMYEVLAPPFPDFCESQQHLKDCFLNLGNVYTL 659
            :..|.::..|.|               .|||.|
Mouse   323 LSQEKMSSVFED---------------SNVYML 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-3NP_725048.1 TPR repeat 74..103 CDD:276809
TPR repeat 108..142 CDD:276809
TPR repeat 150..177 CDD:276809
SET_SMYD4 235..537 CDD:380934 79/296 (27%)
zf-MYND 284..323 CDD:460312 14/38 (37%)
Smyd2NP_081072.1 SET_SMYD2 7..269 CDD:380979 80/301 (27%)
zf-MYND 52..90 CDD:460312 14/38 (37%)
TPR_10 388..422 CDD:463861
Blue background indicates that the domain is not in the aligned region.

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