DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sod3 and ccs1

DIOPT Version :10

Sequence 1:NP_001033939.2 Gene:Sod3 / 36232 FlyBaseID:FBgn0033631 Length:243 Species:Drosophila melanogaster
Sequence 2:NP_001342818.1 Gene:ccs1 / 2541803 PomBaseID:SPAC22E12.04 Length:297 Species:Schizosaccharomyces pombe


Alignment Length:88 Identity:23/88 - (26%)
Similarity:34/88 - (38%) Gaps:22/88 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 GDLTNGCISMG----AHYNPDKVDHGG--PDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGK 138
            ||::.|..|.|    ..:|.:..:.|.  .|.||.  |.|.|...:...:..|..:|     :..
pombe   127 GDISRGLKSAGDSLVTLFNANSNEQGKIVLDKEVS--GSLPNWIGHCFVLKCVDDSD-----SAT 184

  Fly   139 LGIIGRGVVVHELEDDLGLGNHT 161
            :|||.|..         |||.:|
pombe   185 MGIISRSA---------GLGQNT 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sod3NP_001033939.2 Sod_Cu 43..178 CDD:459663 23/88 (26%)
ccs1NP_001342818.1 PLN02957 <89..210 CDD:215516 23/88 (26%)

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