DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp47F and tspan6

DIOPT Version :9

Sequence 1:NP_725044.1 Gene:Tsp47F / 36230 FlyBaseID:FBgn0033629 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_001039117.1 Gene:tspan6 / 733938 XenbaseID:XB-GENE-868432 Length:252 Species:Xenopus tropicalis


Alignment Length:234 Identity:72/234 - (30%)
Similarity:122/234 - (52%) Gaps:15/234 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IKYVLFAFNVLFAISGLGILIAGAVVLADVNEFNHFVEGRVLAPPIVLIVTGLIIFLIASLGCFG 73
            :|.||..:..:|.|:|:.:|..|......::.:...:.......|.|||.||.:|.|:.:.|||.
 Frog    17 LKSVLLIYTFIFWITGVILLTVGVWGKVSLDIYFSLLNENATNVPYVLIGTGAVIILLGTFGCFA 81

  Fly    74 AIKESPTLLITFAVLLAVIFIVELAVGIAASVFKKDLEGMVKNSLQESIKRSNSED---TMAWDN 135
            ..:.|..:|..:|:.|::||:|||...|...||:.:::...:....:::|:.|:..   :.|.|.
 Frog    82 TCRASTWMLKLYAMFLSIIFLVELIAAIVGLVFRHEIKNSFEQGYLQALKQYNATGDPRSQAVDT 146

  Fly   136 IQQKLMCCGVDSPADWRTLSANKT--LPGSCCQPQYIDSTVGHCLESPA--LGK--DKYFQVGCV 194
            ||:.|.||||:|.::|......||  :|.|||:      ..|:|.|:..  |||  .|.|:.||:
 Frog   147 IQRTLQCCGVNSYSEWGQTQYYKTHGIPQSCCR------VPGNCSEADMKDLGKAGGKVFKQGCI 205

  Fly   195 GKLKDRIEKNAIILIGVGIGIAFIQILGIVLACYLANSI 233
            ..:...:|....::.|:..|||..|::|:.|||.|:..|
 Frog   206 SLVTTVMESRMGVVAGISFGIACFQLVGMFLACCLSRYI 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp47FNP_725044.1 Tetraspannin 9..233 CDD:278750 71/232 (31%)
uroplakin_I_like_LEL 102..205 CDD:239409 32/111 (29%)
tspan6NP_001039117.1 Tetraspannin 17..240 CDD:366035 70/228 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H20700
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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