DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp47F and Tsp42Ee

DIOPT Version :9

Sequence 1:NP_725044.1 Gene:Tsp47F / 36230 FlyBaseID:FBgn0033629 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_001260753.1 Gene:Tsp42Ee / 35614 FlyBaseID:FBgn0029506 Length:228 Species:Drosophila melanogaster


Alignment Length:249 Identity:77/249 - (30%)
Similarity:128/249 - (51%) Gaps:39/249 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 CGPSLIKYVLFAFNVLFAISGL-----GILIAGAVVLADVNEFNHFVEGRVLAP-----PIVLIV 58
            ||.|::||:||.||.:.::.|:     |:||..::.:.:||       |:|..|     ||:||.
  Fly     3 CGTSMVKYILFIFNTIVSVIGILGIVYGVLILKSIGVVEVN-------GQVGFPIQALMPIILIS 60

  Fly    59 TGLIIFLIASLGCFGAIKESPTLLITFAVLLAVIFIVELAVGIAASVFKKDLEGMVKNSLQESIK 123
            .|.|:..|:.|||.|||:||..:.:::|..|.::.|::|...:.....:::.|..:.|.::.:  
  Fly    61 LGSIVVFISFLGCCGAIRESVCMTMSYATFLLILLILQLTFVVLLFTHREEFENAMGNVIENA-- 123

  Fly   124 RSNSEDTM---AWDNIQQKLMCCGVDSPADWRTLSANKTLPGSCCQPQYIDSTVGHCLESPALGK 185
             .|||.|.   .:|.||:.|.|||..|..|:  :.....:|.|||.        |.|| .|.   
  Fly   124 -WNSEHTYKGGVFDTIQKSLHCCGSSSALDY--IGKGDLVPPSCCS--------GSCL-IPT--- 173

  Fly   186 DKYFQVGCVGKLKDRIEKNAIILIGVGIGIAFIQILGIVLACYLANSIRQERAK 239
             .|:. ||.||..:.:...:.....||||:..|:::|.:.||.|||::|..:.:
  Fly   174 -NYYP-GCRGKFVELMTTGSDNAKYVGIGLIGIELIGFIFACCLANNVRNYKRR 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp47FNP_725044.1 Tetraspannin 9..233 CDD:278750 73/236 (31%)
uroplakin_I_like_LEL 102..205 CDD:239409 28/105 (27%)
Tsp42EeNP_001260753.1 Tetraspannin 8..219 CDD:278750 73/236 (31%)
tetraspanin_LEL 106..187 CDD:239401 28/99 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442942
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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