DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp47F and cd9a

DIOPT Version :10

Sequence 1:NP_725044.1 Gene:Tsp47F / 36230 FlyBaseID:FBgn0033629 Length:239 Species:Drosophila melanogaster
Sequence 2:XP_005159038.1 Gene:cd9a / 322455 ZFINID:ZDB-GENE-030131-1175 Length:228 Species:Danio rerio


Alignment Length:250 Identity:66/250 - (26%)
Similarity:110/250 - (44%) Gaps:48/250 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GPSLIKYVLFAFNVLFAISGLGILIAGAVVLADVNEFNHFVEGRVLAPPI------VLIVTGLII 63
            |...:||::|.||.:|.|:|..:|..|..:..|....:.| ||. .:|.:      :||..|.::
Zfish     7 GEMCVKYLMFVFNFIFWIAGTAVLAVGLWLRFDPKTKSLF-EGE-NSPYVFYTGVYILIAAGALM 69

  Fly    64 FLIASLGCFGAIKESPTLLITFAVLLAVIFIVELAVGI-----------AASVFKKDLEGMVKNS 117
            .::...||.|||:|||.:|..|...|.|||.||:|.||           ..:.|.:......:.|
Zfish    70 MVVGFFGCCGAIQESPCMLGLFFFFLLVIFAVEVAAGIWGFSNQTKVTEDITTFYRQTYDTYQQS 134

  Fly   118 LQESIKRSNSEDTMAWDNIQQKLMCCGVDSPADWRTLSANKTLPGSCCQPQYIDSTVGHCLESPA 182
            .||::|:     |:..  .|..|.|||...       :..::|..:|.:.:.:|:.:   ::|  
Zfish   135 KQEALKK-----TLRL--FQHGLNCCGPSG-------NMQESLDETCPKKEGLDNLI---IKS-- 180

  Fly   183 LGKDKYFQVGCVGKLKDRIEKNAIILIGVGIGIAFIQILGIVLACYLANSIRQER 237
                      |...:.:.......|:.||||....|.|.|::.:..|..:||:.|
Zfish   181 ----------CPDAIDEVFNSKLHIIGGVGIATGVIMIFGMIFSMMLCCAIRKTR 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp47FNP_725044.1 Tetraspanin 9..231 CDD:459767 62/238 (26%)
tetraspanin_LEL <134..205 CDD:351888 10/70 (14%)
cd9aXP_005159038.1 Tetraspanin 11..219 CDD:459767 62/238 (26%)
CD9_LEL 110..193 CDD:239405 16/111 (14%)

Return to query results.
Submit another query.