DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp47F and tsp-12

DIOPT Version :10

Sequence 1:NP_725044.1 Gene:Tsp47F / 36230 FlyBaseID:FBgn0033629 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_501853.1 Gene:tsp-12 / 177890 WormBaseID:WBGene00006638 Length:308 Species:Caenorhabditis elegans


Alignment Length:140 Identity:29/140 - (20%)
Similarity:55/140 - (39%) Gaps:29/140 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VFSVYDWEGSGQMDAMDLGNALRALNLNPT-IELIGKMGGTQKRGEKKIKFEEFLPIFSQVKKE- 78
            :.|.|.:.|:.. .|::..|.::...:.|. |..:|.:......|    .::|.|..|..:::: 
 Worm   283 MISGYAYHGNAH-GAIETFNEMQRAKVKPNGITFLGLLSACSHVG----MWQEGLRYFDMMRQDY 342

  Fly    79 ------KEQGCFEDFL----------ECLKLYDKNEDGTMLLAELTHSLTALGERLDD--VELDN 125
                  :..||..|.|          |..|......| :.:...|..|....| .||.  |.:|:
 Worm   343 QIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPD-SKIWGSLLSSCRTPG-NLDVALVAMDH 405

  Fly   126 VMKDCMDPED 135
            :::  ::|||
 Worm   406 LVE--LEPED 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp47FNP_725044.1 Tetraspanin 9..231 CDD:459767 29/140 (21%)
tetraspanin_LEL <134..205 CDD:351888 2/2 (100%)
tsp-12NP_501853.1 Tetraspanin 38..293 CDD:459767 3/9 (33%)
tetraspanin_LEL 133..268 CDD:351888
Blue background indicates that the domain is not in the aligned region.

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