DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp47F and Cd53

DIOPT Version :10

Sequence 1:NP_725044.1 Gene:Tsp47F / 36230 FlyBaseID:FBgn0033629 Length:239 Species:Drosophila melanogaster
Sequence 2:NP_031677.1 Gene:Cd53 / 12508 MGIID:88341 Length:219 Species:Mus musculus


Alignment Length:224 Identity:77/224 - (34%)
Similarity:112/224 - (50%) Gaps:27/224 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LIKYVLFAFNVLFAISGLGILIAGAVVLADVNEFNHFVEGRVLAPPIVLIVTGLIIFLIASLGCF 72
            |:|||||.||:||.:.|..||..|...|........|.....|....:|::.|.||.::|.|||.
Mouse     8 LLKYVLFIFNLLFWVCGCCILGFGIYFLVQNTYGVLFRNLPFLTLGNILVIVGSIIMVVAFLGCM 72

  Fly    73 GAIKESPTLLITFAVLLAVIFIVELAVGIAASVFKKDLEGMVKNSLQESIKRSNSED-TM-AWDN 135
            |:|||:..||::|.|||.:|.:.|:.:.|...|:::.|..:|...|.:||:..:|:: || |||.
Mouse    73 GSIKENKCLLMSFFVLLLIILLAEVTIAILLFVYEQKLNTLVAEGLNDSIQHYHSDNSTMKAWDF 137

  Fly   136 IQQKLMCCGVDSPADWRTLSANKTLPGSCCQPQYIDSTVGHCLESPALGKDKYFQVGCVGKLKDR 200
            ||.:|.||||:..:||     ....|.||                |: |.|..   ||..|.|..
Mouse   138 IQTQLQCCGVNGSSDW-----TSGPPSSC----------------PS-GADVQ---GCYNKAKSW 177

  Fly   201 IEKNAIILIGVGIGIAFIQILGIVLACYL 229
            ...|.:.:..:.|.:..||:||:..|..|
Mouse   178 FHSNFLYIGIITICVCVIQVLGMSFALTL 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp47FNP_725044.1 Tetraspanin 9..231 CDD:459767 76/223 (34%)
tetraspanin_LEL <134..205 CDD:351888 20/70 (29%)
Cd53NP_031677.1 Tetraspanin 9..208 CDD:459767 76/223 (34%)
CD53_like_LEL 104..186 CDD:239417 32/106 (30%)

Return to query results.
Submit another query.