DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment INHA and scw

DIOPT Version :9

Sequence 1:NP_002182.1 Gene:INHA / 3623 HGNCID:6065 Length:366 Species:Homo sapiens
Sequence 2:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:242 Identity:52/242 - (21%)
Similarity:82/242 - (33%) Gaps:80/242 - (33%)


- Green bases have known domain annotations that are detailed below.


Human   111 FRYMFRPSQHTRSRQ--------VTSAQLWFHT-GLDRQGTAASNSSEPLLGLLALSPGGPVAVP 166
            |.|....|.:|.|.|        ..:.:.|.|. ||.|:.                      .:.
  Fly   180 FSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRN----------------------ELR 222

Human   167 MSLGHAPPHWAVLHLATSALSLLTHPVLVLLLRCPLCTCSARPEATPFLVAH------------T 219
            :|:|.:       .|:|.|..|:|..             ::|....||:|.:            .
  Fly   223 ISIGDS-------QLSTFAAGLVTPQ-------------ASRTSLEPFIVGYFNGPELLVKIQKL 267

Human   220 RTRPPSGGERARRSTPLMSWPWSPSALRLLQRPPEEPAAHANCHRVALNISFQELGWERWIVYPP 284
            |.:......||...:|    |..|.....|.|||:      :|.|:...:.|:||....|::.|.
  Fly   268 RFKRDLEKRRAGGGSP----PPPPPPPVDLYRPPQ------SCERLNFTVDFKELHMHNWVIAPK 322

Human   285 SFIFHYCHGGCGLHIPPNLSLPVPGAPPT---PAQPYSLLPGAQPCC 328
            .|..::|.|||...:...::........|   ..||:  ||  :|||
  Fly   323 KFEAYFCGGGCNFPLGTKMNATNHAIVQTLMHLKQPH--LP--KPCC 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
INHANP_002182.1 TGFB 262..366 CDD:214556 20/70 (29%)
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 22/115 (19%)
TGFB 300..400 CDD:214556 20/70 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.