DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lambdaTry and Tpsab1

DIOPT Version :9

Sequence 1:NP_610673.1 Gene:lambdaTry / 36214 FlyBaseID:FBgn0043470 Length:272 Species:Drosophila melanogaster
Sequence 2:NP_062195.2 Gene:Tpsab1 / 54271 RGDID:3066 Length:310 Species:Rattus norvegicus


Alignment Length:286 Identity:93/286 - (32%)
Similarity:137/286 - (47%) Gaps:43/286 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSRILVVFLVLGVGCSLADPIYRNEEVHIPKLDGRIVGGQDTNITQYPHQISMRYRGN---HRCG 62
            |.::|::.|.|     |:..::....:.:|: :| |||||:.:..::|.|:|:|....   |.||
  Rat    38 MLKLLLLTLPL-----LSSLVHAAPSLAMPR-EG-IVGGQEASGNKWPWQVSLRVNDTYWMHFCG 95

  Fly    63 GTIYRSNQIISAAHCVN-TLSGPENLTIVAGSSNIWFPTGPQQELEVREIIIHPKYRTLNNDYDA 126
            |::.....:::|||||. ..:.|..|.:......:::   ....|.|.:||.||.:....:..|.
  Rat    96 GSLIHPQWVLTAAHCVGPNKADPNKLRVQLRKQYLYY---HDHLLTVSQIISHPDFYIAQDGADI 157

  Fly   127 AILILDGDFEFNDAVQPIEL--AKERPDHDTPVTVTGWGTTSEGGTISDV-------LQEVSVNV 182
            |:|.|.........|..:.|  |.|.....|...|||||..:     :||       |:||.|.:
  Rat   158 ALLKLTNPVNITSNVHTVSLPPASETFPSGTLCWVTGWGNIN-----NDVSLPPPFPLEEVQVPI 217

  Fly   183 VDNSNCKNAYSIMLTS---------RMLCAGVNGGGKDACQGDSGGPLV--YNNTLL--GIVSWG 234
            |:|..|...|...|.:         .|||||  ..|.|:||||||||||  ..:|.|  |:||||
  Rat   218 VENRLCDLKYHKGLNTGDNVHIVRDDMLCAG--NEGHDSCQGDSGGPLVCKVEDTWLQAGVVSWG 280

  Fly   235 TGCAREKYPGVYCSVPDVLDWLVETV 260
            .|||:...||:|..|...|||:...|
  Rat   281 EGCAQPNRPGIYTRVTYYLDWIYRYV 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lambdaTryNP_610673.1 Tryp_SPc 35..255 CDD:214473 83/245 (34%)
Tryp_SPc 36..259 CDD:238113 85/248 (34%)
Tpsab1NP_062195.2 Tryp_SPc 66..302 CDD:214473 84/245 (34%)
Tryp_SPc 66..302 CDD:238113 84/245 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.