DRSC/TRiP Functional Genomics Resources

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Protein Alignment lambdaTry and svh-1

DIOPT Version :9

Sequence 1:NP_610673.1 Gene:lambdaTry / 36214 FlyBaseID:FBgn0043470 Length:272 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:239 Identity:82/239 - (34%)
Similarity:119/239 - (49%) Gaps:25/239 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 RIVGGQDTNITQYPHQISMRYRGN--HRCGGTIYRSNQIISAAHCVNTLSGPENLTIVAGSSNIW 97
            |:|||.:|....:|...::|.:..  |.||.:|.....:|:||||........:..:|.|..:..
 Worm   712 RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNN 776

  Fly    98 FPTGPQQELEVREIIIHPKYRTLNNDYDAAIL-ILDGDFEFNDAVQPIELAKERPDHD---TP-- 156
            ...|.:|...::.|..:|.|:.:.: :|.||| |.....|||:..|||.|    |..|   ||  
 Worm   777 QTDGNEQIFYLQRIHFYPLYKDIFS-HDIAILEIPYPGIEFNEYAQPICL----PSKDFVYTPGR 836

  Fly   157 -VTVTGWGTTSEGGTISDVLQEVSVNVVDNSNCKNA---YSIMLTSRMLCAGVNGGGKDACQGDS 217
             ..|:|||  |.|...::.||...:.:::..:|.|:   ||.|..| ..|||...||.|:|||||
 Worm   837 QCVVSGWG--SMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRS-AFCAGYLEGGIDSCQGDS 898

  Fly   218 GGPLVYNN-----TLLGIVSWGTGCAREKYPGVYCSVPDVLDWL 256
            |||.....     .|.|::|||.|||::|.||:|..|...|.|:
 Worm   899 GGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWI 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lambdaTryNP_610673.1 Tryp_SPc 35..255 CDD:214473 81/236 (34%)
Tryp_SPc 36..259 CDD:238113 81/238 (34%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SRCR_2 599..681 CDD:382996
Tryp_SPc 713..945 CDD:238113 81/238 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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