DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sha and F31C3.6

DIOPT Version :9

Sequence 1:NP_001137645.1 Gene:sha / 36213 FlyBaseID:FBgn0003382 Length:1633 Species:Drosophila melanogaster
Sequence 2:NP_001021435.1 Gene:F31C3.6 / 173377 WormBaseID:WBGene00009288 Length:554 Species:Caenorhabditis elegans


Alignment Length:627 Identity:114/627 - (18%)
Similarity:204/627 - (32%) Gaps:204/627 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 CTCRCLPYQRAYREDLGICVDDIHECSLSPFVSGSSSEKIPFVFLPLKGQIIYPSREISF--ASI 224
            |:|.|.....:|...:|.|||.:::|| :.....|.:..||.|.|. ...|:.|..|:.|  |.|
 Worm    82 CSCICPLATPSYVSTVGKCVDRLNDCS-NTIRWKSINFAIPVVQLQ-PHTIVLPDAELDFRGAGI 144

  Fly   225 HTPV-------CAVTGAQYLGSN-GWSDLRNPIDTDYPFRMFRDEGRSFLLWLGEADLRQKMQGR 281
            .|..       |::....|...| .|..:......   |::....|:..:.:.|.......:.|.
 Worm   145 RTSSRGADEWNCSIKKIMYENLNTKWRSIAKERGI---FQLTSSNGKPIVYFGGTEFDASFLTGA 206

  Fly   282 LIVVHLVCRDMTVALNASNHVKGEPLMPPRNVHSPCVAFRVNGSPVKYAHNVPEVFFQPANSTTL 346
            ::::.|.|:....|::|       |.         |::.|:.|:....:|...:.|........:
 Worm   207 VVMIKLDCKTFMSAVSA-------PF---------CISLRIAGTSGTSSHFDHKRFDSEEPGWRV 255

  Fly   347 ASTSDGMTMREYVVIGICSLLLGLIYVASVFLYLY-MKKRKRHSSRHSLDNLTNDINYPKNDQVT 410
            .||        :::|.:..:::.||....|:...: :||||          |.:|.      |:.
 Worm   256 EST--------FLLIIVALIVIVLIITLVVWNICWGIKKRK----------LISDF------QMQ 296

  Fly   411 YGAPFSRVGSIYSSNSMGLGNGNESNTRTSIGSLKEDMGIVKNNPLLQHFPQLSEREHNSGFASD 475
            :...:.....|...      ||.|                         |.::.|:|        
 Worm   297 FVQQYKHQNQILQQ------NGTE-------------------------FEEIEEQE-------- 322

  Fly   476 ISNSNSECEMEEKIKTSVLVHPQLSKSPKPSGGTDNAAMDVDDFLQDNECLPAENVAVIDELMSE 540
            |..|:|:                                                          
 Worm   323 ILQSHSQ---------------------------------------------------------- 329

  Fly   541 EKLENLRAMVSGNVRKKLYFNPAYFEPHLLAEPPQAAIEFLQKIREVIAIAKYKMASKRYQPSLN 605
                      |.| ||:|.|:..||:...:..|...||:||..:|.|:.:||.::..:|:.|:|.
 Worm   330 ----------SLN-RKRLIFSSEYFDSAQMTHPSPLAIQFLYDLRRVVDVAKERIRQRRFIPALP 383

  Fly   606 IIPEEQHPE-------------SSSSSPMFNIPLQQSLAGKGMGDKRNSIEQWLQSVP------- 650
            :|.|:...|             :||::|..:...:|.....|. :.|:..|:..::.|       
 Worm   384 VIIEDVENEIDYVEAVEGPVDIASSATPESSPRSEQKSVDSGR-ESRDESEEDEETAPGTEGQKE 447

  Fly   651 -----NSDATPAPKTLDRPAPPTAKKP-------SSGSPNKGSLRKEISAPKE-------RPPPP 696
                 .|..:...|:.::.||..:..|       ....|.|.:....:.:|:|       |...|
 Worm   448 ISTMTQSKVSDIVKSFEKSAPRPSYVPIMLNSSMRKKKPLKVASTTHVDSPEEVAQAFRSRIKAP 512

  Fly   697 PMQKSKADEGNAKSSSPAPSGPHSSRSTGKSSPEQSPKPKTN 738
            .....|......|..:..||....::|..:....|...|.||
 Worm   513 TAFTDKKSPRERKGYAVFPSDGTFNKSLPRRGKRQPHAPLTN 554



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0016908
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR39387
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

Return to query results.
Submit another query.