DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13223 and ncx-4

DIOPT Version :9

Sequence 1:NP_610656.1 Gene:CG13223 / 36190 FlyBaseID:FBgn0033599 Length:527 Species:Drosophila melanogaster
Sequence 2:NP_001040663.1 Gene:ncx-4 / 172834 WormBaseID:WBGene00003569 Length:596 Species:Caenorhabditis elegans


Alignment Length:527 Identity:110/527 - (20%)
Similarity:204/527 - (38%) Gaps:117/527 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 IYVFWMMQITIKNYFCPTLMVIADLLRMNESTAGVTVLAIANGSPDFFTA------------IAS 109
            ||:|..:.|....:|.|:|.|:.:.|.:::..||.|.:|....:|:|||:            |.:
 Worm   110 IYMFVSLAIVCDEFFVPSLDVLTEKLSLSDDVAGATFMAAGGSAPEFFTSVIGVFIAQNNVGIGT 174

  Fly   110 RVQTSKHSFLSCMSQAMFLHIFVAGLVILT-KPFNMRANTYLRDFGFLFLNTVYMDYIHKRPKGI 173
            .|.::..:.|..::   |..:|...::.|| .|.....:.|:.....|..  .:||.:      |
 Worm   175 IVGSATFNILCVLA---FCTLFSKSILDLTWWPLFRDVSIYMLALAMLVF--FFMDEM------I 228

  Fly   174 SWLAALPSAFIFVGYVVVAIVDQHL--LIARIQKMEQRQLNVAEAL--------------QLEEL 222
            ::..||....|::.|..|...:..|  |:.:....|:...:..:.|              |||..
 Worm   229 TFPEALAMFSIYIVYCTVMKFNGQLEQLVKKGSDSEEASAHETQKLAADVPHNNNNNDLAQLEGS 293

  Fly   223 KPQKEMPLKRQEIDRPSIGHGSRNKRIFRQFWNTVAE-----FDKDRFHRGTFLVKL------YL 276
            :.::....:||.:  |.:..|:..:....|..|...|     .::|...|....|.:      .|
 Worm   294 ELRRRSSARRQSV--PILHSGTMFRNGIMQLMNQTLEQLPEDSEEDDSSRSRSNVNIESHDMHRL 356

  Fly   277 IVKQ-----------PIDMLLRILIPK-VDMEAPQYGWSKLLFNIQV--VLVPTYIAYIIVRGYS 327
            .|.|           .|..||.....| :||..|: .|.|.|..:.:  |::|.::....||...
 Worm   357 NVNQSMPDRRSSQIEEIKSLLEEQEEKPLDMTWPE-TWVKRLTYVLLAPVVIPMWVTIPDVRKSH 420

  Fly   328 IAGL--AVYMIALILMIPVATLIFFLTRTDTPPIFFRFTSGVGFMAAVFLIFCLTTEVNAMFFTM 390
            ..||  |.::|:::.:                 .||.:.. |.:...:...|.:.||:..:    
 Worm   421 NRGLYPATFIISILWI-----------------AFFSYLM-VWWANTIGETFVIPTEIIGL---- 463

  Fly   391 ATILQVSQEFSLATAICWALSSNDLVANLSLAHQGWPRMAMTATFSAPVFASFVFLALPLVVN-- 453
                         |.:....|..||:.::.:|.:|...||::::..:.:|...|.|.:|.::.  
 Worm   464 -------------TILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDVCVGLPIPWLLYFL 515

  Fly   454 -SFVNAPGN-IFPTEGGFGETVCIFLEVGMGFSMLSVLT-----TNFKLRRACGFLLVSYYIFFV 511
             .::..|.. :.|........:|   .|||.|.||.||.     :.:|:.:..|.|::..|:||.
 Worm   516 IEYIKHPNEPLSPISVSSKGLLC---SVGMLFIMLIVLVFAIFLSGWKMNKIFGILMIVSYVFFC 577

  Fly   512 GVLILLE 518
            ...:.||
 Worm   578 VFSVSLE 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13223NP_610656.1 Na_Ca_ex 45..194 CDD:279963 35/149 (23%)
Na_Ca_ex 365..516 CDD:279963 33/159 (21%)
ncx-4NP_001040663.1 2A1904 <48..594 CDD:273344 110/527 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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