DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment metro and LOC556594

DIOPT Version :10

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_073791303.1 Gene:LOC556594 / 556594 -ID:- Length:604 Species:Danio rerio


Alignment Length:665 Identity:221/665 - (33%)
Similarity:330/665 - (49%) Gaps:141/665 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 MASDINWDPA--------------LSKLISTLKESENLS-NDQEIDFLKALLESKELNALVNVHT 55
            |..|:..||.              |:.:|:.::.|.|.. |..|:  |..||.:..|.:|:.|  
Zfish     1 MKPDMETDPGSAPLEVGDKGLAQILAHVIAEVRGSINKDINGAEL--LYGLLNAPWLQSLLKV-- 61

  Fly    56 KVAKVGRDDRLAPVLSTSAQVLYEVLEQLSQHCHLNDDCKEAFHLLQDSHLQHLLFAHDAIAQKD 120
                                  ||.|::     ||....:..........||.||.|||.::.:|
Zfish    62 ----------------------YECLQR-----HLRGPARPYVSYSSGLSLQALLSAHDTVSLRD 99

  Fly   121 FYPHLPEAPVEMDEDEETIKIVQLVKSNEPLTGAQSTEPIVGATIKTDEESGKIIIARIMHGGAA 185
            :.|.||..|.::.||||.::||.|||:|:||          ||||:.|:.:|:|.|||::|||.|
Zfish   100 YEPDLPPLPNDLPEDEEAMRIVCLVKNNQPL----------GATIRRDDVTGEIYIARVIHGGLA 154

  Fly   186 DRSGLIHVGDEVIEVNNINVEGKTPGDVLTILQNSEGTITFKLVPADNKGAQRESKVRVRAHFDY 250
            |||||:|.||.::|||...|.|..|..::.||.:|.|||.||:||..::....::.:.|||..||
Zfish   155 DRSGLLHAGDRLVEVNGQPVFGLEPEQIIQILAHSHGTIMFKVVPITDRPVNNQTMLYVRAMVDY 219

  Fly   251 NPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIPSRALQERR------- 308
            :|..||.|||.:||:||::.|:|.||.|.|:.||||.|....||.||||||.:|.:|:       
Zfish   220 SPQADPSIPCADAGMAFRKCDILEIVDQSDSLWWQAVKLPSTSACAGLIPSTSLLKRKQKEFWWS 284

  Fly   309 -ILHDRT-QKNGTDLDSKPGSCA-----------------------------------------S 330
             ..|..| .|:.:.:|.:....|                                         .
Zfish   285 QPYHPHTCVKSLSTVDEEDDMIAIDEKCVEADEEAFESEELKDEASEFSTNIEGIYLTGFRRSLR 349

  Fly   331 LCTTPPG---------SPRLPASSSTSSCRQPKTKKIMYDLTENDDFDREQIATYEEVAKLYPRP 386
            ||....|         |.|.|| |..||...|                      ||:|.:....|
Zfish   350 LCRRRRGQAFGTSQFCSLRCPA-SCYSSLSNP----------------------YEDVVRYQHHP 391

  Fly   387 -GVFRPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADI 450
             ...|.|.|||..|||.|||||:||..:|:.::.|||:||||.:..|.|||||.||:||:.|:.:
Zfish   392 EHTHRLIALIGPSGVGVNELRRKLIEINPKVYQGPVPHTTRPPKCHEEAGREYHFVSREQFDSMV 456

  Fly   451 EAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELDIL 515
            ...:|:|.||.:|||||.|.::||.::.:|.:||:.....|::::||.:|:.::|.:|||.::.:
Zfish   457 CNHRFIEFGELRGHLYGISVDAVKDVLTSGKICVIDIEPYALESVRTPELRAYVIFIKPPTVEQM 521

  Fly   516 KATRTEARAKSTFDEANARSFTDEEFEDMIKSAERIDFLYGHFFDVELVNGELVNAFEQLVQNVQ 580
            |.||..:...:.:  ..:|.|.||:|.::..:..:::..|..|||..:||..|..|..||:..|:
Zfish   522 KRTRMNSNIITNY--YTSRPFRDEDFLEIEDAGRKMEQHYCQFFDHVIVNDGLQAACVQLLTAVR 584

  Fly   581 RLENEPVWAPSMWVQ 595
            |.::||.|.|:.|::
Zfish   585 RAQDEPQWVPTSWIR 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 11/51 (22%)
L27 75..127 CDD:197794 15/51 (29%)
PDZ_MPP3-MPP4-MPP7-like 140..230 CDD:467260 44/89 (49%)
SH3_MPP 243..302 CDD:212796 33/58 (57%)
Guanylate_kin 390..575 CDD:395500 73/184 (40%)
LOC556594XP_073791303.1 None

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