DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment metro and sdt

DIOPT Version :9

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:NP_001033835.2 Gene:sdt / 44861 FlyBaseID:FBgn0261873 Length:2020 Species:Drosophila melanogaster


Alignment Length:690 Identity:230/690 - (33%)
Similarity:345/690 - (50%) Gaps:150/690 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ALSKLISTLKESENLSNDQEIDFLKALLESKELNALVNVHTKVAKVGRDDRLAPVLSTSAQVLYE 79
            ||::|.:.|.:|...:....:....::|.|..:..::...|.|.:..|.....|:..:|..:..:
  Fly  1364 ALTRLQNQLSKSGLSTLAGRVSAAHSVLASASVAHVLAARTAVLQRRRSRVSGPLHHSSLGLQKD 1428

  Fly    80 VLEQLSQHCHLNDDCK-EAFHLLQDSHLQHLLFAHDAI--------------------------- 116
            ::|.|:|.   |.... |..:||....::.||.|||.|                           
  Fly  1429 IVELLTQS---NTAAAIELGNLLTSHEMEGLLLAHDRIANHTDGTPSPTPTPTPAIGAATGSTLS 1490

  Fly   117 -----------------------AQKDFYPHLPEA----PVEM---------------------- 132
                                   ||:...| ||..    ||.|                      
  Fly  1491 SPVAGPKRNLGMVVPPPVVPPPLAQRGAMP-LPRGESPPPVPMPPLATMPMSMPVNLPMSACFGT 1554

  Fly   133 -DEDEETIKIVQLVKSNEPLTGAQSTEPIVGATIKTDEESGKIIIARIMHGGAADRSGLIHVGDE 196
             ::..:.|:|:|:.||.|||          |||::.:.|:  ::|.||:.||||::|||:|.|||
  Fly  1555 LNDQNDNIRIIQIEKSTEPL----------GATVRNEGEA--VVIGRIVRGGAAEKSGLLHEGDE 1607

  Fly   197 VIEVNNINVEGKTPGDVLTILQNSEGTITFKLVPADNK------------------GAQRESKV- 242
            ::|||...:.|||..:|..:|...:||:||.:|||.:.                  ||.|::.| 
  Fly  1608 ILEVNGQELRGKTVNEVCALLGAMQGTLTFLIVPAGSPPSVGVMGGTTGSQLAGLGGAHRDTAVL 1672

  Fly   243 RVRAHFDYNPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKE-HERSARAGLIPSRALQE 306
            .|||||||:|:.|.||||:|.|::||:|||||:::::|..||||.:| .|....||||||::.|.
  Fly  1673 HVRAHFDYDPEDDLYIPCRELGISFQKGDVLHVISREDPNWWQAYREGEEDQTLAGLIPSQSFQH 1737

  Fly   307 RRILHDRTQK------------NGTDLDSKPGSCASLCTTPPGSPRLPASSSTSSCRQPKTKKIM 359
            :|    .|.|            .|.|.....|: ..||.......:..|||...   .|     :
  Fly  1738 QR----ETMKLAIAEEAGLARSRGKDGSGSKGA-TLLCARKGRKKKKKASSEAG---YP-----L 1789

  Fly   360 YDLTENDDFDREQIATYEEVAKLYPRPGVFRPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYT 424
            |..|..|:.|.|:|.||||||..|||....|||||||.|.:||:|||:||:| |.|:|.:.||:|
  Fly  1790 YATTAPDETDPEEILTYEEVALYYPRATHKRPIVLIGPPNIGRHELRQRLMA-DSERFSAAVPHT 1853

  Fly   425 TRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHY 489
            :|..|.|||.|.:|.|:.|:..:|||.|.:|||||||:...||||.|:::::|.:|.:|||:.|.
  Fly  1854 SRARREGEVPGVDYHFITRQAFEADILARRFVEHGEYEKAYYGTSLEAIRTVVASGKICVLNLHP 1918

  Fly   490 QAIKTLRTAQLKPFLIHVKPPELDILKATRTEARAKSTFDEANARSFTDEEFEDMIKSAERIDFL 554
            |::|.||.:.|||:::.|.||.||.|:..:..          |...|.:||.:|:|.:|..::..
  Fly  1919 QSLKLLRASDLKPYVVLVAPPSLDKLRQKKLR----------NGEPFKEEELKDIIATARDMEAR 1973

  Fly   555 YGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWAPSMWV 594
            :||.||:.::|.:...|:.||:..:..||.||.|.|:.||
  Fly  1974 WGHLFDMIIINNDTERAYHQLLAEINSLEREPQWVPAQWV 2013

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 8/50 (16%)
L27 75..127 CDD:197794 17/102 (17%)
PDZ_signaling 139..229 CDD:238492 38/89 (43%)
SH3_MPP 243..302 CDD:212796 34/59 (58%)
Guanylate_kin 390..575 CDD:279019 79/184 (43%)
GuKc 399..580 CDD:214504 73/180 (41%)
sdtNP_001033835.2 PDZ_signaling <54..102 CDD:238492
L27 1423..1466 CDD:295425 13/45 (29%)
PDZ_signaling 1562..1640 CDD:238492 38/89 (43%)
SH3_MPP5 1673..1734 CDD:212969 35/60 (58%)
Guanylate_kin 1820..1994 CDD:279019 79/184 (43%)
GuKc 1831..2002 CDD:214504 73/181 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468176
Domainoid 1 1.000 150 1.000 Domainoid score I2697
eggNOG 1 0.900 - - E1_COG0194
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D245552at33208
OrthoFinder 1 1.000 - - FOG0000824
OrthoInspector 1 1.000 - - otm14545
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23122
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.850

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