DRSC/TRiP Functional Genomics Resources

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Protein Alignment metro and CASK

DIOPT Version :10

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:NP_001262811.1 Gene:CASK / 42567 FlyBaseID:FBgn0013759 Length:929 Species:Drosophila melanogaster


Alignment Length:625 Identity:195/625 - (31%)
Similarity:309/625 - (49%) Gaps:118/625 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ALSKLISTLKESENLSNDQ-EIDFLKALLESKELNALVNVHTKVAKVGRDDRLAPVLSTS----- 73
            |:.:::..|.:..:|.:.. :.|.|:.:|....|:..:.:.         ||:|..:.||     
  Fly   346 AVQRILDCLDDIYSLQDAHVDADVLRDMLRDNRLHQFLQLF---------DRIAATVVTSNGRAP 401

  Fly    74 -AQVL---YEVLEQLSQHCHLND-----DCKEAFHLLQDSHLQHLLFAHDAIAQKDFY------- 122
             |:.:   .:||||||.....|.     ..:|...||...|:|.||.:||.:| :|.|       
  Fly   402 AAEAVGRCRDVLEQLSSTSGGNSLGGKYAKEELMRLLAAPHMQALLHSHDVVA-RDVYGEEALRV 465

  Fly   123 --PHLPEAPV----EMDEDE-------ETIKIVQLVKSNEPLTGAQSTEPIVGATIKTDEESGKI 174
              |  |..|.    |:|..|       ..:::||..|:.:        || :|.|:|..|: |:.
  Fly   466 TPP--PMVPYLNGDELDNVEGGELQHVTRVRLVQFQKNTD--------EP-MGITLKMTED-GRC 518

  Fly   175 IIARIMHGGAADRSGLIHVGDEVIEVNNINVEGKTPGDVLTILQNSEGTITFKLVPADNKGAQRE 239
            |:|||||||...|...:|||||:.|:|...|:.::.|.:..:|:.:.|::|||:||: .:.|...
  Fly   519 IVARIMHGGMIHRQATLHVGDEIREINGQPVQHQSVGQLQRMLREARGSVTFKIVPS-YRSAPPP 582

  Fly   240 SKVRVRAHFDYNPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIPSRAL 304
            .::.|||.|||||..|..|||.:||::||.||:|.|:::||.:|||||.: .....||||||..|
  Fly   583 CEIFVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDHHWWQARLD-TVGGSAGLIPSPEL 646

  Fly   305 QERRILHDRTQKNGTDLDSKPGSCASLCTTPPGSPRLPASSSTSSC----RQPKTKKIMYDLTEN 365
            ||.||                 :|.::..|         .....:|    |:.|..:..|....|
  Fly   647 QEWRI-----------------ACQTVDKT---------KQEQVNCSIFGRKKKQCRDKYLAKHN 685

  Fly   366 DDFDREQIATYEEVAKL------YPRPGVFRPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYT 424
            ..||...:.|||||.|:      :.|    :.:||:||.||||..::..||::.|:|:..|:|:|
  Fly   686 AIFDTLDVVTYEEVVKVPVGDPNFQR----KTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPHT 746

  Fly   425 TRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHY 489
            |||.:..|..||.|.||:.::|.|||.|.:::|:|.::..:|||..::::.|...|.:.:|....
  Fly   747 TRPAKPEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDTIRRIHTEGKMAILDVEP 811

  Fly   490 QAIKTLRTAQLKPFLIHVKPPELDILKATRTEARAKSTFDEANARSFTDEEFEDMIKSAERIDFL 554
            ||:|.||||:..|:::.:..|.|.                  |...: |...|.:.|.:|.:..|
  Fly   812 QALKILRTAEFTPYVVFIAAPSLQ------------------NIADY-DGSLERLAKESEMLRQL 857

  Fly   555 YGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWAPSMWV 594
            ||||||:.:||.::......|...:.|:...|.|.|..|:
  Fly   858 YGHFFDLTIVNNDISETIATLETAIDRVHTTPQWVPVSWL 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 8/51 (16%)
L27 75..127 CDD:197794 20/68 (29%)
PDZ_MPP3-MPP4-MPP7-like 140..230 CDD:467260 33/89 (37%)
SH3_MPP 243..302 CDD:212796 32/58 (55%)
Guanylate_kin 390..575 CDD:395500 61/184 (33%)
CASKNP_001262811.1 STKc_CASK 8..308 CDD:270996
L27 347..396 CDD:460717 9/57 (16%)
L27 406..462 CDD:460717 19/56 (34%)
PDZ_CASK-like 494..574 CDD:467267 33/89 (37%)
SH3_CASK 586..646 CDD:213014 33/60 (55%)
Guanylate_kin 710..883 CDD:395500 63/195 (32%)
Blue background indicates that the domain is not in the aligned region.

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