DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment metro and Lrguk

DIOPT Version :9

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_017448017.1 Gene:Lrguk / 296968 RGDID:1308226 Length:1271 Species:Rattus norvegicus


Alignment Length:624 Identity:124/624 - (19%)
Similarity:226/624 - (36%) Gaps:148/624 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LSKLISTLKESENLSNDQEIDFLKALLESKELNALVNVHTKVAKVGRDDRLAPV---LSTSAQVL 77
            |.:||....|:|....:|:.:   ...|..|.:.:.|:..:...|.|::.:|..   |..|.:..
  Rat    63 LHQLIHRSHEAEVEQEEQQEE---GESEESEESEMQNLEDEYDGVLREENVADALDGLGWSGRGT 124

  Fly    78 YEVLEQLS-QHCHLNDDCKEAFHLLQDSHLQHLLFAHDAIAQKDFYPHLPEAPVEMDEDEETIKI 141
            .:|...|: .||.|.|....:.::    |||.|..:.:.|........:|             .:
  Rat   125 EQVYRNLNLSHCELIDVSILSGYV----HLQKLNLSGNRIEDLSCVSCMP-------------YL 172

  Fly   142 VQLVKSNEPLTGAQSTEPIVGATIKTDEESGKI-----------IIARIMHGGAADR-SGLIHVG 194
            ::|..|...||...:.:|......|.|..|.:|           :...|:.....:. :||    
  Rat   173 LELNASQNRLTTFFNFKPPQNLKQKVDFSSNQISEMYDLSAYHTLTQLILDNNEIEEITGL---- 233

  Fly   195 DEVIEVNNINVEGKTPGDVLTILQNSEGTITFKLVPADNKGAQRESKVRVRAHFDYNPDVDPYIP 259
            ::.|.:.::::.|..   :.||  ...||:..|::...|.  |.|:                 |.
  Rat   234 EKCISLTHLSLAGNR---ITTI--KGLGTLPIKVLSVSNN--QIET-----------------IT 274

  Fly   260 CKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIPSRALQERRILHDRTQKNGTDLDSK 324
            ..|...|.|..|:.|               ::.|:..|| .:..|.|...|.|...|..::::. 
  Rat   275 GLEELKALQNLDLSH---------------NQISSLHGL-ENHDLLEVINLEDNKIKELSEIEY- 322

  Fly   325 PGSCASLCTTPPGSPRLPASSSTSSCRQP-KTKK-----IMYDLTENDDFDREQIATYEE---VA 380
                         ...||.....:..|.| :||.     :::.|....:.|:::|...|:   |.
  Rat   323 -------------IENLPILRVLNLLRNPIQTKPEYWFFVIFMLLRLTELDQQKIKVEEKVYAVN 374

  Fly   381 KLYPRPGV-------------------------------FRPIVLIGAPGVGRNELRRRLIARDP 414
            |..|.|.|                               :..::|.|....|:.||..||..:..
  Rat   375 KYDPPPEVVAAQDHMTHVVNSMSQPQRIFDSTLPSLDAPYPMLILTGPEACGKRELAHRLCRQFS 439

  Fly   415 EKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNA 479
            ..||....:||||...||....:|.||::|..|..:..|||:....|..|.||.:.::|:.|...
  Rat   440 TYFRYGACHTTRPPYFGEGDRVDYHFVSQEVFDEMLSMGKFILTFNYGNHNYGLNRDTVEGIARD 504

  Fly   480 GCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELDILKATRTEARAKSTFDEANARSFTDEEFEDM 544
            |....:....:.|::|:.:..:|..|.|.|.:.:..:.   ..|.|..|..|        |.|..
  Rat   505 GLASCIHMELEGIRSLKYSYFEPRYILVVPMDKEKYEG---YLRRKGLFSRA--------EIEIA 558

  Fly   545 IKSAE---RIDFLYGHFFDVELVNGELVNAFEQLVQNVQ 580
            :...:   :::..:..:||..:...:|..|:::|.:.::
  Rat   559 VSRVDLYVKVNRKFPGYFDAVINADDLDIAYQKLSELIR 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 10/50 (20%)
L27 75..127 CDD:197794 11/52 (21%)
PDZ_signaling 139..229 CDD:238492 19/101 (19%)
SH3_MPP 243..302 CDD:212796 9/58 (16%)
Guanylate_kin 390..575 CDD:279019 46/187 (25%)
GuKc 399..580 CDD:214504 45/183 (25%)
LrgukXP_017448017.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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