DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment metro and Cask

DIOPT Version :10

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_038955486.1 Gene:Cask / 29647 RGDID:62004 Length:932 Species:Rattus norvegicus


Alignment Length:658 Identity:199/658 - (30%)
Similarity:327/658 - (49%) Gaps:134/658 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DINWDP----------ALSKLISTLKESENLS--NDQEIDFLKALLESKELNALVNVHTKV-AKV 60
            |.:.||          |:|:::.:|:|...|:  :::::|||.::.:.:.|:.|::::.|: .|.
  Rat   336 DFSEDPTSSGLLAAERAVSQVLDSLEEIHALTDCSEKDLDFLHSVFQDQHLHTLLDLYDKINTKS 400

  Fly    61 GRDDRLAPVLSTSAQVLYEVLEQLSQHCH-LNDDCKEAFHLLQDSHLQHLLFAHDAIAQKDF--- 121
            ....|..|  |.:.|...||||::|  |: .|:|.||...:|...|...||..||.:|.:.:   
  Rat   401 SPQIRNPP--SDAVQRAKEVLEEIS--CYPENNDAKELKRILTQPHFMALLQTHDVVAHEVYSDE 461

  Fly   122 ---------YPHL----PE-APVEMDEDEET-IKIVQLVKSNEPLTGAQSTEPIVGATIKTDEES 171
                     .|:|    || |..:||.:..| :::||..|:.:        || :|.|:|.: |.
  Rat   462 ALRVTPPPTSPYLNGDSPESANGDMDMENVTRVRLVQFQKNTD--------EP-MGITLKMN-EL 516

  Fly   172 GKIIIARIMHGGAADRSGLIHVGDEVIEVNNINVEGKTPGDVLTILQNSEGTITFKLVPA----- 231
            ...|:|||||||...|.|.:|||||:.|:|.|:|..:|...:..:|:...|:||||:||:     
  Rat   517 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRTQS 581

  Fly   232 -----DNKGAQRES------------------------KVRVRAHFDYNPDVDPYIPCKEAGLAF 267
                 |:....|:|                        ::.|||.|:|:|..|..|||||||:.|
  Rat   582 SSCERDSPSTSRQSPANGHSSTNNSVSDLPSTTQPKGRQIYVRAQFEYDPAKDDLIPCKEAGIRF 646

  Fly   268 QRGDVLHIVAQDDAYWWQARKEHERSARAGLIPSRALQERRILHDRTQKNGTDLDSKPGSCASLC 332
            :.||::.|:::||..|||.:.|:.::..||||||..|||.|:                 :|.::.
  Rat   647 RVGDIIQIISKDDHNWWQGKLENSKNGTAGLIPSPELQEWRV-----------------ACIAME 694

  Fly   333 TTPPGSPRLPASSSTSSC----RQPKTKKIMYDLTENDDFDREQIATYEEVAKL--YPRPGVFRP 391
            .|        .....:||    ::.|..|..|....|..||:..:.|||||.||  :.|    :.
  Rat   695 KT--------KQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPAFKR----KT 747

  Fly   392 IVLIGAPGVGRNELRRRLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFVAREKMDADIEAGKFV 456
            :||:||.||||..::..||.:.||:|..|:|:||||.:..|..|:.|.||:.::|..||...:::
  Rat   748 LVLLGAHGVGRRHIKNTLITKHPERFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYL 812

  Fly   457 EHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELDILKATRTE 521
            |:|.::..:|||..|:::.|...|.:.:|....||:|.||||:..||::.:..|.:         
  Rat   813 EYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTI--------- 868

  Fly   522 ARAKSTFDEANARSFTDEEFEDMIKSAERIDFLYGHFFDVELVNGELVNAFEQLVQNVQRLENEP 586
               ....:|       ||..:.:.|.::.:...|.|:||:.::|.|:......|.:.|:.:...|
  Rat   869 ---TPGLNE-------DESLQRLQKESDVLQRTYAHYFDLTIINNEIDETIRHLEEAVELVCTAP 923

  Fly   587 VWAPSMWV 594
            .|.|..||
  Rat   924 QWVPVSWV 931

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 12/53 (23%)
L27 75..127 CDD:197794 20/68 (29%)
PDZ_MPP3-MPP4-MPP7-like 140..230 CDD:467260 35/89 (39%)
SH3_MPP 243..302 CDD:212796 29/58 (50%)
Guanylate_kin 390..575 CDD:395500 56/184 (30%)
CaskXP_038955486.1 STKc_CASK 8..313 CDD:270996
L27 354..407 CDD:197794 12/52 (23%)
L27 412..462 CDD:460717 18/51 (35%)
PDZ_CASK-like 495..575 CDD:467267 35/89 (39%)
SH3_CASK 622..683 CDD:213014 30/60 (50%)
Guanylate_kin 744..917 CDD:395500 58/195 (30%)
Blue background indicates that the domain is not in the aligned region.

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