DRSC/TRiP Functional Genomics Resources

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Protein Alignment metro and caska

DIOPT Version :9

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_017213110.1 Gene:caska / 259195 ZFINID:ZDB-GENE-020802-4 Length:965 Species:Danio rerio


Alignment Length:690 Identity:190/690 - (27%)
Similarity:323/690 - (46%) Gaps:160/690 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DINWDP----------ALSKLISTLKESENLS--NDQEIDFLKALLESKELNALVNVHTKVAKVG 61
            |.:.||          |:|:::.:|:|...|:  :::::|||.::.:...|:.|::::.|:    
Zfish   331 DFSEDPTSSGLLAAERAVSQVLDSLEEIHALTDCSEKDLDFLHSVFQDHHLHTLLDLYDKI---- 391

  Fly    62 RDDRLAPVL--------------------STSAQVLYEVLEQLSQHCH-LNDDCKEAFHLLQDSH 105
             :.:.:|.:                    |.:.:.|..|||::|  |: .|.|.||...:|...|
Zfish   392 -NTKSSPQIRNPSSDAVQRAKETSTEDGSSAALKHLEYVLEEIS--CYPENTDAKELRRILTQPH 453

  Fly   106 LQHLLFAHDAIAQKDF------------YPHL----PEAPVEMDEDEETIKIVQLVKSNEPLTGA 154
            ...||..||.:|.:.:            .|:|    ||: ...|.|.|.:..|:||:..      
Zfish   454 FMALLQTHDVVAHEVYSDDAMRVTPPPTSPYLNGDSPES-TNGDMDIENVTRVRLVQFQ------ 511

  Fly   155 QSTEPIVGATIKTDEESGKIIIARIMHGGAADRSGLIHVGDEVIEVNNINVEGKTPGDVLTILQN 219
            ::|:..:|.|:|.: :....|:|||||||...|.|.:|:|||:.|:|.|:|..:|...:..:|:.
Zfish   512 KNTDEPMGITLKMN-DLNHCIVARIMHGGMIHRQGTLHIGDEIREINGISVANQTVEQLQKMLRE 575

  Fly   220 SEGTITFKLVPA----------DNKGAQRES---------------------------------- 240
            ..|:||||:||:          ::....|:|                                  
Zfish   576 MRGSITFKIVPSYRTQQSSCEKESPSTSRQSPANGHSSINSSILDLPSTIQPKGRQISRPPIKDK 640

  Fly   241 ---KVRVRAHFDYNPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIPSR 302
               |:.|||.|:|:|..|..|||||||:.|:.||::.|:.:||..|||.:.|:.::..||||||.
Zfish   641 FSIKIYVRAQFEYDPVKDDLIPCKEAGIRFRVGDIIQIINKDDHNWWQGKLENTKNGTAGLIPSP 705

  Fly   303 ALQERRILHDRTQKNGTDLDSKPGSCASLCTTPPGSPRLPASSSTSSC----RQPKTKKIMYDLT 363
            .|||.|:                 :|.::..|        .....:||    ::.|..|..|...
Zfish   706 ELQEWRV-----------------ACIAMEKT--------KQEQQASCTWFGKKKKQYKDKYLAK 745

  Fly   364 ENDDFDREQIATYEEVAKL--YPRPGVFRPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYTTR 426
            .|..||:..:.|||||.||  :.|    :.:||:||.||||..::..||.:.|::|..|:|:|||
Zfish   746 HNAVFDQLDLVTYEEVVKLPAFKR----KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR 806

  Fly   427 PMRTGEVAGREYIFVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHYQA 491
            |.:..|..|:.|.||:.::|..||....::|:|.::..:|||..|:::.|...|.:.:|....||
Zfish   807 PPKKDEENGKNYFFVSHDQMMQDISNNDYLEYGSHEDAMYGTRLETIRKIHEQGLIAILDVEPQA 871

  Fly   492 IKTLRTAQLKPFLIHVKPPEL--DILKATRTEARAKSTFDEANARSFTDEEFEDMIKSAERIDFL 554
            :|.||||:..|:::.:..|.:  .:.:..|.            .|...||..:.:.|.:|.:...
Zfish   872 LKVLRTAEFAPYVVFIAAPTITPGMNELPRW------------CRKLPDESLQRLQKESEILQKT 924

  Fly   555 YGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWAPSMWV 594
            |.|:||..::|.|:......|.:.:..:.:...|.|..||
Zfish   925 YAHYFDQTIINNEIDETIRLLEEAIDMVCSTAQWVPVSWV 964

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 10/52 (19%)
L27 75..127 CDD:197794 19/68 (28%)
PDZ_signaling 139..229 CDD:238492 32/89 (36%)
SH3_MPP 243..302 CDD:212796 29/58 (50%)
Guanylate_kin 390..575 CDD:279019 56/186 (30%)
GuKc 399..580 CDD:214504 53/182 (29%)
caskaXP_017213110.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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