DRSC/TRiP Functional Genomics Resources

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Protein Alignment metro and caska

DIOPT Version :10

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_017213110.1 Gene:caska / 259195 ZFINID:ZDB-GENE-020802-4 Length:965 Species:Danio rerio


Alignment Length:690 Identity:190/690 - (27%)
Similarity:323/690 - (46%) Gaps:160/690 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DINWDP----------ALSKLISTLKESENLS--NDQEIDFLKALLESKELNALVNVHTKVAKVG 61
            |.:.||          |:|:::.:|:|...|:  :::::|||.::.:...|:.|::::.|:    
Zfish   331 DFSEDPTSSGLLAAERAVSQVLDSLEEIHALTDCSEKDLDFLHSVFQDHHLHTLLDLYDKI---- 391

  Fly    62 RDDRLAPVL--------------------STSAQVLYEVLEQLSQHCH-LNDDCKEAFHLLQDSH 105
             :.:.:|.:                    |.:.:.|..|||::|  |: .|.|.||...:|...|
Zfish   392 -NTKSSPQIRNPSSDAVQRAKETSTEDGSSAALKHLEYVLEEIS--CYPENTDAKELRRILTQPH 453

  Fly   106 LQHLLFAHDAIAQKDF------------YPHL----PEAPVEMDEDEETIKIVQLVKSNEPLTGA 154
            ...||..||.:|.:.:            .|:|    ||: ...|.|.|.:..|:||:..      
Zfish   454 FMALLQTHDVVAHEVYSDDAMRVTPPPTSPYLNGDSPES-TNGDMDIENVTRVRLVQFQ------ 511

  Fly   155 QSTEPIVGATIKTDEESGKIIIARIMHGGAADRSGLIHVGDEVIEVNNINVEGKTPGDVLTILQN 219
            ::|:..:|.|:|.: :....|:|||||||...|.|.:|:|||:.|:|.|:|..:|...:..:|:.
Zfish   512 KNTDEPMGITLKMN-DLNHCIVARIMHGGMIHRQGTLHIGDEIREINGISVANQTVEQLQKMLRE 575

  Fly   220 SEGTITFKLVPA----------DNKGAQRES---------------------------------- 240
            ..|:||||:||:          ::....|:|                                  
Zfish   576 MRGSITFKIVPSYRTQQSSCEKESPSTSRQSPANGHSSINSSILDLPSTIQPKGRQISRPPIKDK 640

  Fly   241 ---KVRVRAHFDYNPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARKEHERSARAGLIPSR 302
               |:.|||.|:|:|..|..|||||||:.|:.||::.|:.:||..|||.:.|:.::..||||||.
Zfish   641 FSIKIYVRAQFEYDPVKDDLIPCKEAGIRFRVGDIIQIINKDDHNWWQGKLENTKNGTAGLIPSP 705

  Fly   303 ALQERRILHDRTQKNGTDLDSKPGSCASLCTTPPGSPRLPASSSTSSC----RQPKTKKIMYDLT 363
            .|||.|:                 :|.::..|        .....:||    ::.|..|..|...
Zfish   706 ELQEWRV-----------------ACIAMEKT--------KQEQQASCTWFGKKKKQYKDKYLAK 745

  Fly   364 ENDDFDREQIATYEEVAKL--YPRPGVFRPIVLIGAPGVGRNELRRRLIARDPEKFRSPVPYTTR 426
            .|..||:..:.|||||.||  :.|    :.:||:||.||||..::..||.:.|::|..|:|:|||
Zfish   746 HNAVFDQLDLVTYEEVVKLPAFKR----KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTR 806

  Fly   427 PMRTGEVAGREYIFVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHYQA 491
            |.:..|..|:.|.||:.::|..||....::|:|.::..:|||..|:::.|...|.:.:|....||
Zfish   807 PPKKDEENGKNYFFVSHDQMMQDISNNDYLEYGSHEDAMYGTRLETIRKIHEQGLIAILDVEPQA 871

  Fly   492 IKTLRTAQLKPFLIHVKPPEL--DILKATRTEARAKSTFDEANARSFTDEEFEDMIKSAERIDFL 554
            :|.||||:..|:::.:..|.:  .:.:..|.            .|...||..:.:.|.:|.:...
Zfish   872 LKVLRTAEFAPYVVFIAAPTITPGMNELPRW------------CRKLPDESLQRLQKESEILQKT 924

  Fly   555 YGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWAPSMWV 594
            |.|:||..::|.|:......|.:.:..:.:...|.|..||
Zfish   925 YAHYFDQTIINNEIDETIRLLEEAIDMVCSTAQWVPVSWV 964

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 10/52 (19%)
L27 75..127 CDD:197794 19/68 (28%)
PDZ_MPP3-MPP4-MPP7-like 140..230 CDD:467260 32/89 (36%)
SH3_MPP 243..302 CDD:212796 29/58 (50%)
Guanylate_kin 390..575 CDD:395500 56/186 (30%)
caskaXP_017213110.1 STKc_CASK 8..308 CDD:270996
L27 349..402 CDD:197794 11/57 (19%)
L27 429..471 CDD:460717 16/43 (37%)
PDZ_CASK-like 506..586 CDD:467267 31/86 (36%)
SH3_CASK 646..707 CDD:213014 30/60 (50%)
Guanylate_kin 768..950 CDD:395500 58/197 (29%)
Blue background indicates that the domain is not in the aligned region.

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