DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment metro and Dlg1

DIOPT Version :9

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_038943929.1 Gene:Dlg1 / 25252 RGDID:2505 Length:939 Species:Rattus norvegicus


Alignment Length:709 Identity:182/709 - (25%)
Similarity:298/709 - (42%) Gaps:174/709 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VMASDINWDPALSKLISTLKESENLSN---------DQEIDFLKALLESKELNALV-----NVH- 54
            |..:|:. |...||.:..|||:.::..         .::|..:|.:...|.|...:     |.| 
  Rat   279 VNEADVR-DVTHSKAVEALKEAGSIVRLYVKRRKPASEKIMEIKLIKGPKGLGFSIAGGVGNQHI 342

  Fly    55 --------TKVAKVG---RDDRLA---PVLSTSAQVLYEV--------LEQLSQHCHL------- 90
                    ||:.:.|   :|.:|.   .:|:.::..|.||        |:..|...:|       
  Rat   343 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAKPTS 407

  Fly    91 ---ND-----DCKEAFHLLQDSHLQHLLFAHDAIAQKDFYPHLPEAPVEMDEDEETIKIVQLVKS 147
               ||     |...:.....|:|:....:.....|....|..:.:|.:..||.....:.|.|.:.
  Rat   408 MYINDGYAPPDITNSSSQSVDNHVSPSSYLGQTPASPARYSPISKAVLGDDEITREPRKVVLHRG 472

  Fly   148 NEPLTGAQSTEPIVGATIKTDEESGKIIIARIMHGGAADRSGLIHVGDEVIEVNNINVEGKTPGD 212
            :   ||       :|..|...|:...|.|:.|:.||.||.||.:..||.:|.||::::...:...
  Rat   473 S---TG-------LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQ 527

  Fly   213 VLTILQNSEGTITF--KLVP----------------------ADNKGAQRESKVR---VRAHFDY 250
            ....|:|:...:|.  :..|                      :...|:.|.|:.|   |||.|||
  Rat   528 AAAALKNAGQAVTIVAQYRPEEYSRFEAKIHDLREQMMNSSVSSGSGSLRTSQKRSLYVRALFDY 592

  Fly   251 NPDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQARK--EHERSARAGLIPSRALQERR----- 308
            :...|..:|.:  ||.|:.||:||::...|..|||||:  ....|...|:|||:...|::     
  Rat   593 DKTKDSGLPSQ--GLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVIPSKRRVEKKERARL 655

  Fly   309 ---------------ILHDRTQKN----------GTDLDSKPGSCASLCTTPPGSPRLPASSSTS 348
                           ..:|:.:||          ..|...:..|.|....|.      .||.|.|
  Rat   656 KTVKFNSKTRGDKGQSFNDKRKKNLFSRKFPFYKNKDQSEQETSDADQHVTS------NASDSES 714

  Fly   349 SCRQPKTKKIMYDLTENDDF------DREQIATYEEVAKLYPRPGVFRPIVLIGAPGVGRNELRR 407
            |          |.:...|::      ..|.:.:||.|.:  ......||::::|..   ::.:..
  Rat   715 S----------YLILITDEYGCSKGGQEEYVLSYEPVNQ--QEVNYTRPVIILGPM---KDRVND 764

  Fly   408 RLIARDPEKFRSPVPYTTRPMRTGEVAGREYIFV-AREKMDADIEAGKFVEHGEYKGHLYGTSAE 471
            .||:..|:||.|.||:||||.|..||.||:|.|| :||:|:.||:..||:|.|:|..||||||.:
  Rat   765 DLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQ 829

  Fly   472 SVKSIVNAGCVCVLSPHYQAIKTLRTAQLKPFLIHVKPPELD-ILKATR--TEARAKSTFDEANA 533
            ||:::...|..|:|.....|||.|:.|||.|..|.:||..:: |::..:  |:.:|:.||:.|..
  Rat   830 SVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTDEQARKTFERAVR 894

  Fly   534 RSFTDEEFEDMIKSAERIDFLYGHFFDVELVNGE-LVNAFEQLVQNVQRLENEPVWAPS 591
               .::||.:             ||  ..:|.|: |.:.:.|:.|.::......:|.|:
  Rat   895 ---LEQEFTE-------------HF--TAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPA 935

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 16/79 (20%)
L27 75..127 CDD:197794 13/74 (18%)
PDZ_signaling 139..229 CDD:238492 24/91 (26%)
SH3_MPP 243..302 CDD:212796 26/63 (41%)
Guanylate_kin 390..575 CDD:279019 68/189 (36%)
GuKc 399..580 CDD:214504 67/185 (36%)
Dlg1XP_038943929.1 PDZ_signaling 224..308 CDD:238492 8/29 (28%)
PDZ_signaling 317..403 CDD:238492 18/85 (21%)
PDZ_assoc 404..465 CDD:402299 10/60 (17%)
PDZ 463..547 CDD:214570 24/93 (26%)
SH3_DLG1 582..648 CDD:212964 27/67 (40%)
Guanylate_kin 748..926 CDD:395500 70/198 (35%)
L27_1 2..62 CDD:401120
MAGUK_N_PEST 106..223 CDD:402306
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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