DRSC/TRiP Functional Genomics Resources

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Protein Alignment metro and lin-2

DIOPT Version :10

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:NP_001024587.1 Gene:lin-2 / 181400 WormBaseID:WBGene00002991 Length:961 Species:Caenorhabditis elegans


Alignment Length:627 Identity:180/627 - (28%)
Similarity:296/627 - (47%) Gaps:131/627 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DPALSKLISTLKESENLSNDQEID-FLKALLESKELNALVNVHTKVAKVGRDDRLAPVLSTSAQV 76
            :|.::::.::....|.|:   :|| .|....|:.||..|:|              :|.|::..|.
 Worm   420 EPVVTEVDTSTLRKETLN---QIDGLLGPSPEALELRQLLN--------------SPHLASCVQA 467

  Fly    77 LYEVLEQLSQHCHLNDDCKEAFH--------LLQD---SHLQHLLFAHDAIAQKDFYPHLPEAPV 130
            |..|:      |.:.|...||..        :..|   ::|...:....|......:.|..::.|
 Worm   468 LDVVV------CEIRDPKNEASGSGDKEGNCVSSDPAPAYLNGGVLPLGAQRAGTSFEHFNQSAV 526

  Fly   131 EMDEDEE---------TIKIVQLVKSNEPLTGAQSTEPIVGATIKTDEESGKIIIARIMHGGAAD 186
            ....|||         .:::||..|..:        || :|.|:|.:|: |:..:|||||||...
 Worm   527 HTSYDEEEEELYDCMSRLRLVQFQKDTQ--------EP-MGITLKVNED-GRCFVARIMHGGMIH 581

  Fly   187 RSGLIHVGDEVIEVNNINVEGKTPGDVLTILQNSEGTITFKLVPADNKGAQRESKVRVRAHFDYN 251
            |...:|||||:.|:|.::|..::...:..:|:::.|.:|||::|: .:.|....::.|||.|||.
 Worm   582 RQATLHVGDEIREINGMSVANRSVESLQEMLRDARGQVTFKIIPS-YRSAPPACEIFVRAQFDYE 645

  Fly   252 PDVDPYIPCKEAGLAFQRGDVLHIVAQDDAYWWQAR-----------KEHERSAR---AGLIPSR 302
            |..|..|||.:||:.|:.||:|.::::||..|||||           ...:||.:   ||||||.
 Worm   646 PSQDDLIPCPQAGIPFKTGDILQVISKDDHNWWQARFVSSFPSIGNSSNAQRSNQQQVAGLIPSP 710

  Fly   303 ALQERRILHDRTQKNGTDLDSKPGSCASLCTTPPGSPRLPASSSTSSC--------RQPKTKKIM 359
            .|||.|                     :.|        |....|.::|        ::.|.....
 Worm   711 ELQEWR---------------------TAC--------LAMERSKNTCNTHCMWFNKKKKYYTTK 746

  Fly   360 YDLTENDDFDREQIATYEEVAKL--YPRPGVFRPIVLIGAPGVGRNELRRRLIARDPEKFRSPVP 422
            |....:..||:..:.|||||.:|  |.|    :.:||:||.||||..::..||.|.|.:|..|:|
 Worm   747 YLQKHSALFDQLDLVTYEEVMRLSQYRR----KTLVLLGAHGVGRRHIKNTLIHRHPNRFAYPIP 807

  Fly   423 YTTRPMRTGEVAGREYIFVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSP 487
            :||||.|..||.|:.|.||..|:|.|||:..:::|:|.::..:|||..|::::|..:|.:.:|..
 Worm   808 HTTRPPRKDEVDGKHYYFVTNEQMMADIQNNEYLEYGTHEESMYGTKLETIRNIHKSGKIAILDV 872

  Fly   488 HYQAIKTLRTAQLKPFLIHVKPPELDILKATRTEARAKSTFDEANARSFTDEEFEDMIKSAERID 552
            ..||:|.||||:..||::.:..|.|..::.                   .|...|.::..::.:.
 Worm   873 EPQALKVLRTAEYSPFVVFIAAPNLQGMQD-------------------PDGSLEKLLNESDVLR 918

  Fly   553 FLYGHFFDVELVNGELVNAFEQLVQNVQRLENEPVWAPSMWV 594
            ..:||.||..:.|.::.:...||.:.|::|...|.|.|..||
 Worm   919 QAFGHLFDFIITNSDIDDTIAQLERLVEKLPAYPQWLPVTWV 960

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 10/51 (20%)
L27 75..127 CDD:197794 11/62 (18%)
PDZ_MPP3-MPP4-MPP7-like 140..230 CDD:467260 31/89 (35%)
SH3_MPP 243..302 CDD:212796 31/72 (43%)
Guanylate_kin 390..575 CDD:395500 58/184 (32%)
lin-2NP_001024587.1 Protein Kinases, catalytic domain 13..312 CDD:473864
L27 374..425 CDD:197794 1/4 (25%)
L27 430..478 CDD:197794 16/70 (23%)
PDZ_CASK-like 545..625 CDD:467267 31/89 (35%)
SH3_MPP1-like 637..712 CDD:212968 32/74 (43%)
Guanylate_kin 773..948 CDD:395500 62/197 (31%)
Blue background indicates that the domain is not in the aligned region.

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