DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment metro and card14

DIOPT Version :9

Sequence 1:NP_610642.2 Gene:metro / 36176 FlyBaseID:FBgn0050021 Length:595 Species:Drosophila melanogaster
Sequence 2:XP_002937355.2 Gene:card14 / 100486738 XenbaseID:XB-GENE-989887 Length:972 Species:Xenopus tropicalis


Alignment Length:607 Identity:113/607 - (18%)
Similarity:212/607 - (34%) Gaps:167/607 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DPALSKLISTLKESENLS------NDQEIDFLKALLESKE-----------LNAL----VNVHTK 56
            |...:::.:.|.|.::|.      .|:..:.|:.:|..:|           |:|.    |:..:|
 Frog   362 DMVQTEISTILAEKDSLRQQVMELTDRNSELLQQILSLQEQLQTQREMRGSLHACEQRDVSTKSK 426

  Fly    57 VAKVGRDDRLAPVLSTSAQVLYEVLEQLSQH-CHLNDDCKEAFHLLQDSHLQHLLFAHDAIAQKD 120
            ..::.|...:.|....|..:...:.|..::: |..:.|..|:|:.....|..:|.....: |.:|
 Frog   427 HMRLVRMYAVCPSEEGSRSLSSSISETWTENSCQTSSDLGESFNSYAPPHDDYLTDLTKS-ASQD 490

  Fly   121 FYPHLPEAPVEMD-EDEETIKIVQLVKSNEPLT--------------GAQSTEPIVGATIKTDE- 169
            ....|.....|.| |.||.:.:...::|:|..:              ..:.|..:.....:.|: 
 Frog   491 LPDLLQTEKTETDSEYEEGLPMFSQMQSSESCSSYNNLAISVPRRRHACRDTSRVTVIAFQGDDL 555

  Fly   170 ----------ESGKIIIARIMHGGAADRSGLIHVGDEVIEVN--------NINVEGKTPGDVLTI 216
                      .:| |.|.|:..|.|||...| ..|.::|.|:        .:.:||.|..|...|
 Frog   556 LKQISIIGGNRTG-IFIHRVTEGSAADEMSL-RPGYQIIAVDFDVLNPSYKVALEGMTSEDAHCI 618

  Fly   217 LQNSEG--TITFKLVPADNKGAQRESKVRVRAHFDYNPDVDPYIPCKEA-------GLAFQRGDV 272
            |....|  .::.|.    ||...|:....:.:....:.| ..|:...::       ||....|::
 Frog   619 LNRVNGFCCLSVKC----NKDEYRKLLRDIESGSVSSGD-SFYVQVNQSMAGRVGGGLQVTCGEI 678

  Fly   273 LHI--VAQDDAYWWQARKEHE---RSARAGLIPSRALQERRI---LHDRTQKNG----------- 318
            |||  .....:|.|.|.:.:.   :...:|:||:....::::   :...|.:||           
 Frog   679 LHITDTMYKGSYQWFAHRVNAYTMKDGESGIIPNYPQAQQQLITTIQHLTWQNGTPRRPQKQIRI 743

  Fly   319 ------------TDLDSKPGSCASLCTTPPGSPRLPASSSTSSCRQPKTKKIMYDLTENDDFDRE 371
                        |.||.  |.|.  |..||....|..|..|         .:.|.|..:      
 Frog   744 VSTDRCNSHLLWTSLDC--GICQ--CEDPPAGSVLGTSCFT---------LLPYTLVTH------ 789

  Fly   372 QIATYEEVAKLYPRPGVFRPIVLIGAPGVGRNELRRRLIARD----PEKFRSPVPYTTRPMRTGE 432
                   :..:.|||.:..|.:|      ||....:...::|    ..::.:...|:.|.:| |:
 Frog   790 -------LKTVIPRPVLLVPSLL------GRILSEKLCSSKDFIKCDTEYLTDAEYSARYLR-GD 840

  Fly   433 VAGREYIFVAREKMDADIEAGKFVEHGEYKGHLYGTSAESVKSIVNAGCVCVLSPHYQAIKTLRT 497
            :.|        ||...|:..              ..:.::|:|:......|:|......:..|..
 Frog   841 IIG--------EKEREDVRC--------------CFTRQNVESVAKQNAHCILELGLSCLSALLR 883

  Fly   498 AQLKPFLIHVKPPELDILKATR 519
            ..:.|.::|:...|    |:|:
 Frog   884 VGIYPIILHIPLTE----KSTK 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
metroNP_610642.2 L27 17..68 CDD:197794 12/71 (17%)
L27 75..127 CDD:197794 10/52 (19%)
PDZ_signaling 139..229 CDD:238492 24/124 (19%)
SH3_MPP 243..302 CDD:212796 14/70 (20%)
Guanylate_kin 390..575 CDD:279019 23/134 (17%)
GuKc 399..580 CDD:214504 21/125 (17%)
card14XP_002937355.2 DD 26..104 CDD:387368
Smc <146..>413 CDD:224117 8/50 (16%)
PDZ_signaling 559..631 CDD:238492 19/73 (26%)
SH3 653..717 CDD:388381 14/64 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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